Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G094870.10 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | HORVU3Hr1G094870.10 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G339200.1 | Wheat | nucleus | 89.5 | 92.86 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 89.01 | 92.22 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 88.8 | 92.0 |
| Os05t0508700-01 | Rice | nucleus | 42.14 | 78.6 |
| KXG22306 | Sorghum | nucleus | 60.92 | 68.01 |
| Zm00001d038655_P003 | Maize | nucleus | 59.87 | 66.23 |
| PGSC0003DMT400042094 | Potato | cytosol | 17.66 | 62.41 |
| Zm00001d010716_P002 | Maize | nucleus | 56.47 | 61.7 |
| AT5G52330.3 | Thale cress | cytosol | 16.69 | 60.45 |
| Solyc06g053740.2.1 | Tomato | cytosol | 16.06 | 55.53 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 49.44 | 51.97 |
| CDX73257 | Canola | cytosol | 14.67 | 51.97 |
| Bra023279.1-P | Field mustard | cytosol | 12.03 | 49.57 |
| CDX93823 | Canola | cytosol | 13.07 | 48.58 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 33.03 | 44.15 |
| Bra010174.1-P | Field mustard | cytosol | 6.61 | 43.18 |
| CDY26906 | Canola | cytosol | 6.61 | 43.18 |
| KRH31732 | Soybean | nucleus | 33.8 | 42.67 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 33.73 | 42.32 |
| KRH34524 | Soybean | nucleus | 33.52 | 42.24 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 32.82 | 42.03 |
| AT4G16045.1 | Thale cress | cytosol | 11.13 | 41.88 |
| CDX86642 | Canola | nucleus | 30.32 | 41.72 |
| CDY10066 | Canola | nucleus | 29.35 | 41.62 |
| KRG92287 | Soybean | nucleus | 32.89 | 41.49 |
| CDY32539 | Canola | nucleus | 28.93 | 41.35 |
| Solyc09g089560.2.1 | Tomato | nucleus | 31.36 | 40.85 |
| AT5G43560.1 | Thale cress | nucleus | 29.62 | 40.38 |
| CDY18218 | Canola | nucleus | 29.69 | 40.36 |
| CDX89828 | Canola | nucleus | 29.69 | 40.25 |
| Bra032518.1-P | Field mustard | nucleus | 27.82 | 40.24 |
| Bra015302.1-P | Field mustard | nucleus | 29.55 | 40.09 |
| CDY01258 | Canola | cytosol | 5.7 | 40.0 |
| AT1G04300.3 | Thale cress | nucleus | 29.83 | 39.65 |
| CDY01264 | Canola | cytosol | 5.63 | 39.51 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 33.73 | 39.5 |
| Solyc06g053750.2.1 | Tomato | nucleus | 31.22 | 39.46 |
| Solyc03g005430.2.1 | Tomato | nucleus | 31.22 | 39.08 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 34.63 | 35.27 |
| CDX94711 | Canola | nucleus | 22.18 | 33.13 |
| Bra033684.1-P | Field mustard | nucleus | 21.28 | 33.01 |
| CDY22344 | Canola | nucleus | 21.28 | 33.01 |
| HORVU3Hr1G075250.1 | Barley | cytosol | 5.7 | 22.28 |
| PGSC0003DMT400042093 | Potato | nucleus | 10.08 | 21.71 |
| HORVU5Hr1G031980.4 | Barley | cytosol | 11.2 | 14.38 |
| HORVU2Hr1G058700.4 | Barley | cytosol | 10.85 | 13.98 |
| HORVU4Hr1G034950.2 | Barley | cytosol | 10.5 | 13.51 |
| HORVU3Hr1G075220.5 | Barley | endoplasmic reticulum | 5.49 | 10.27 |
| HORVU4Hr1G071690.9 | Barley | nucleus | 4.94 | 7.79 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.04 | 7.54 |
| HORVU0Hr1G030140.1 | Barley | mitochondrion | 0.97 | 7.49 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 8.21 | 7.06 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G078170.6 | EnsemblPlantsGene:HORVU1Hr1G078170 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000B46CDFF |
| UniProt:A0A287GD36 | MapMan:22.5.1.6 | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:519268535..519279879
Molecular Weight (calculated)
154380.0 Da
IEP (calculated)
8.654
GRAVY (calculated)
-0.750
Length
1438 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGASATDDS SASTAGMRDD DRSLSGESLS EWRSCDQGES GSPSTSPPFW DTDCDDDDPG PKPSELYGRH TWRIENFSKE KKREMKSEPF EAGGYKWYIL
0101: VYPQGCDVSN HLSLFLCVAN HDKLLPGWSH FAQFTIAVGN MDPKKIKYSD TLHRFWKKEH DWGWKKFMEL SKIQDGFLVD DVLEIIAQVQ VIREKVDRPF
0201: RCLDRPYRRE LLRVYTTNIE QIYRRFIEER RNKITKLIED KIRWSSFRAF WSAIDPRTRH RMSREKTDTI LKVLVKHFFV EKEVTSTLVM DSLYTGLKAL
0301: EYQSKGKKGR TKIAELDELP APMVHVDTDI FVLASDVITL LEKAALEPLP CQPVSPKDDK CSQSRMKDGS SGEVNKISME REERRLTELG RKILETFVLS
0401: HIFSGIEVAY QEAVALKRQE ELIREEEAAG LENETKGKRG GGANEKDKRA KKKQAKQKKN NRKVKDKERE DKSEARILER LNDETTIDDS DGLPSKQAEE
0501: VALKVGLTLE ESASDGPDHL DSSRPTNGKR VSSMEANNSS AFSTDSTAVN GIHSKINNLP DSRNHLSPNR GKNQRNKGIS IISYTEEDDC LPSSSVTGSS
0601: DRNSSGCGTA PKLDRDTVLL TLKDRLRELG QRLHEKNIEG RKLFKAHFEA MESQTKTNGS SSSSSTEKPP DVLKSPDHSP EVMDDVKANE TAYKDVPLAN
0701: CVPEEAVSGT PATSSTEAVP AKAPARTKVD PVSNKDHGSS LTPQPDKDVP LPSRSTKVPP IGSKSTPTDT DKDVSLPSRS PRINRAAPVP PKSLPTDKAT
0801: PVRPKSPPTD KATPVPPKSP PTHKATQVPP KSXXXXXXXX XXXXXXXXXX XXXXXXXXXL TDKAIPVTPK STPTDRGTSV RPKSPVPAKA AVVPLKSLAT
0901: DKANLVPPKS PSAGTSSLVA PITPPSAKDA GTPSRSPQVD KSIPAPPRLP QVDKAAPLPS GSPQTSSTAY SEAREEATPM KVTSTRVSEV AVTTSRPSSA
1001: PVFPTPRTTV PATPQVQVST FLSRSASEAA GRSGNDPSPS APAYVPQTYR NAILGKPGVV TTSSNLSYQP TTLGQGTALS QPLSTYASTA SLMMPPAGRN
1101: DQLLSARHGF KSGLGNSDTL DSWQPWKSDS NINNHVWRDD SPYQRTTNGH AYQQTWKDDA YQQTRGTETE NFSRFGGLQP PRPTPVSFVM QQPQAPVAEE
1201: YQHLDIINDL LNEEQSNGST TEPTHHDYHA YGLPFSLRGN IADSEMASVS SLGRFSRGNI ADSEMASVSS PGRFSRGNLA DLDMASVSSS RRFSRGNLAD
1301: SEMSSVGSPG RFSRGSLADP EMMASASSPG RFNSTDRYYG DGYSRAYDMS PLQGAREMQF SSLDTYATNG GLSDMSPSKP WLYGHGGSAN PSSMNLGSLS
1401: ANGFPQQHHQ LGDYSNLVSG LNGVSAAAYR RQANNGRW
0101: VYPQGCDVSN HLSLFLCVAN HDKLLPGWSH FAQFTIAVGN MDPKKIKYSD TLHRFWKKEH DWGWKKFMEL SKIQDGFLVD DVLEIIAQVQ VIREKVDRPF
0201: RCLDRPYRRE LLRVYTTNIE QIYRRFIEER RNKITKLIED KIRWSSFRAF WSAIDPRTRH RMSREKTDTI LKVLVKHFFV EKEVTSTLVM DSLYTGLKAL
0301: EYQSKGKKGR TKIAELDELP APMVHVDTDI FVLASDVITL LEKAALEPLP CQPVSPKDDK CSQSRMKDGS SGEVNKISME REERRLTELG RKILETFVLS
0401: HIFSGIEVAY QEAVALKRQE ELIREEEAAG LENETKGKRG GGANEKDKRA KKKQAKQKKN NRKVKDKERE DKSEARILER LNDETTIDDS DGLPSKQAEE
0501: VALKVGLTLE ESASDGPDHL DSSRPTNGKR VSSMEANNSS AFSTDSTAVN GIHSKINNLP DSRNHLSPNR GKNQRNKGIS IISYTEEDDC LPSSSVTGSS
0601: DRNSSGCGTA PKLDRDTVLL TLKDRLRELG QRLHEKNIEG RKLFKAHFEA MESQTKTNGS SSSSSTEKPP DVLKSPDHSP EVMDDVKANE TAYKDVPLAN
0701: CVPEEAVSGT PATSSTEAVP AKAPARTKVD PVSNKDHGSS LTPQPDKDVP LPSRSTKVPP IGSKSTPTDT DKDVSLPSRS PRINRAAPVP PKSLPTDKAT
0801: PVRPKSPPTD KATPVPPKSP PTHKATQVPP KSXXXXXXXX XXXXXXXXXX XXXXXXXXXL TDKAIPVTPK STPTDRGTSV RPKSPVPAKA AVVPLKSLAT
0901: DKANLVPPKS PSAGTSSLVA PITPPSAKDA GTPSRSPQVD KSIPAPPRLP QVDKAAPLPS GSPQTSSTAY SEAREEATPM KVTSTRVSEV AVTTSRPSSA
1001: PVFPTPRTTV PATPQVQVST FLSRSASEAA GRSGNDPSPS APAYVPQTYR NAILGKPGVV TTSSNLSYQP TTLGQGTALS QPLSTYASTA SLMMPPAGRN
1101: DQLLSARHGF KSGLGNSDTL DSWQPWKSDS NINNHVWRDD SPYQRTTNGH AYQQTWKDDA YQQTRGTETE NFSRFGGLQP PRPTPVSFVM QQPQAPVAEE
1201: YQHLDIINDL LNEEQSNGST TEPTHHDYHA YGLPFSLRGN IADSEMASVS SLGRFSRGNI ADSEMASVSS PGRFSRGNLA DLDMASVSSS RRFSRGNLAD
1301: SEMSSVGSPG RFSRGSLADP EMMASASSPG RFNSTDRYYG DGYSRAYDMS PLQGAREMQF SSLDTYATNG GLSDMSPSKP WLYGHGGSAN PSSMNLGSLS
1401: ANGFPQQHHQ LGDYSNLVSG LNGVSAAAYR RQANNGRW
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.