Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10066 | Canola | nucleus | 78.66 | 81.07 |
| CDY32539 | Canola | nucleus | 77.61 | 80.62 |
| CDY18218 | Canola | nucleus | 80.57 | 79.58 |
| CDX89828 | Canola | nucleus | 80.77 | 79.55 |
| CDY68000 | Canola | nucleus | 7.75 | 76.42 |
| AT1G04300.3 | Thale cress | nucleus | 78.56 | 75.88 |
| PGSC0003DMT400042094 | Potato | cytosol | 26.32 | 67.57 |
| OQU79503 | Sorghum | nucleus | 26.7 | 61.59 |
| CDX73257 | Canola | cytosol | 22.97 | 59.11 |
| CDX93823 | Canola | cytosol | 20.29 | 54.78 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 56.46 | 51.48 |
| KRG92287 | Soybean | nucleus | 55.31 | 50.7 |
| KRH31732 | Soybean | nucleus | 55.22 | 50.66 |
| CDY26906 | Canola | cytosol | 10.62 | 50.45 |
| KRH34524 | Soybean | nucleus | 54.64 | 50.04 |
| CDY01264 | Canola | cytosol | 9.38 | 47.8 |
| CDY01258 | Canola | cytosol | 9.28 | 47.32 |
| Os05t0508700-01 | Rice | nucleus | 34.74 | 47.08 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 54.93 | 46.74 |
| Solyc03g005430.2.1 | Tomato | nucleus | 50.81 | 46.21 |
| CDX94711 | Canola | nucleus | 41.72 | 45.28 |
| CDY22344 | Canola | nucleus | 40.0 | 45.09 |
| Solyc06g053750.2.1 | Tomato | nucleus | 48.52 | 44.55 |
| Solyc09g089560.2.1 | Tomato | nucleus | 46.99 | 44.47 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 45.07 | 43.77 |
| EES16279 | Sorghum | nucleus | 44.31 | 41.27 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 42.97 | 39.98 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 42.78 | 39.8 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 42.68 | 39.75 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 42.68 | 39.72 |
| KXG22306 | Sorghum | nucleus | 41.05 | 33.31 |
| EES01550 | Sorghum | nucleus | 38.18 | 32.98 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 44.5 | 32.93 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 40.96 | 32.85 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 39.23 | 31.88 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 42.2 | 31.82 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 42.11 | 31.7 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 41.91 | 31.56 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 39.62 | 31.39 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 39.23 | 31.18 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 41.72 | 30.32 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 39.52 | 30.19 |
| PGSC0003DMT400042093 | Potato | nucleus | 17.32 | 27.1 |
| CDY72484 | Canola | cytosol | 3.73 | 23.78 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 6.32 | 21.36 |
| CDX72290 | Canola | cytosol, mitochondrion, plastid | 2.87 | 16.48 |
| CDY14077 | Canola | cytosol | 15.89 | 14.87 |
| CDY04994 | Canola | cytosol | 15.89 | 14.87 |
| CDY55765 | Canola | cytosol | 15.69 | 14.71 |
| CDX70087 | Canola | cytosol | 15.6 | 14.61 |
| CDX98939 | Canola | cytosol | 15.41 | 14.43 |
| CDX81009 | Canola | cytosol | 15.31 | 14.31 |
| CDY53923 | Canola | cytosol | 14.74 | 13.86 |
| CDX73847 | Canola | cytosol | 14.55 | 13.86 |
| CDY01069 | Canola | cytosol | 14.55 | 13.63 |
| CDY08485 | Canola | cytosol | 8.71 | 10.99 |
| CDY47909 | Canola | cytosol | 1.15 | 10.53 |
| CDY00212 | Canola | cytosol | 7.18 | 7.31 |
| CDY08151 | Canola | cytosol | 7.27 | 7.31 |
| CDY05943 | Canola | cytosol | 7.18 | 7.21 |
| CDY67533 | Canola | cytosol, nucleus | 1.24 | 6.77 |
| CDY11532 | Canola | nucleus, plastid | 10.62 | 6.72 |
| CDY58924 | Canola | nucleus, plastid | 10.62 | 6.71 |
| CDY35362 | Canola | nucleus, plastid | 10.33 | 6.56 |
| CDX76975 | Canola | nucleus, plastid | 10.05 | 6.41 |
| CDX86966 | Canola | cytosol | 4.31 | 6.11 |
Protein Annotations
| EnsemblPlants:CDX86642 | EnsemblPlantsGene:GSBRNA2T00145308001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDX86642 | ProteinID:CDX86642.1 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI0004EDB6E4 | MapMan:22.5.1.6 | : | : | : |
Description
BnaC08g00610D
Coordinates
chrLK031846:+:1300953..1306748
Molecular Weight (calculated)
116799.0 Da
IEP (calculated)
6.748
GRAVY (calculated)
-0.806
Length
1045 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTETVNEDSG VGRSVEASSN GHHSLSGESL SLSKWRSSAQ VENGTPSTSL SYWDTDDDED HGLKPSQLFG KHKWKIEKFS EIKKRELRSN YFEAGGYKWY
0101: ILIYPQGCDV CNHLSLFLCV ANHDKLLPGW SHFAQFTIAV VNKDPKKSKF SDTLHRFWKK EHDWGWKKFM ESTKLQDGFI DDSDSLTIEA QVQVIRERVD
0201: RPFRCLHCGY RRELVRVYLS NVEQNCRRFV EEKRSKLGRL IEDKARWTSF GVFWLGMDQN SRHRMSREKM DVILKGIVKH FFIEKEVTST LVMDSLYSGL
0301: KALEGQSKSK KARARSLDAK EYPAPIVSVD KDMFVLVDDV LLLLERAALE PLPPKENKAP QNRTKDGNDG EEVSNEAVER DERHLTELGR RAVEIFVLTH
0401: IFNSKIEVAY KEAIALKRQE DLIREEEEEW LAETEQRAKR GAAEREKKSK KKQAKQKRNK NKGKDKKKEE KVTLATHEKD LEENHHDEEE NDSVTEKAQP
0501: SAEKTDTLEE VSDISDSVDG SADILHPDLE DGDSSSVHWD ADALEIHPPP SEGSSISIST PNGIAERKNP STMDDSSSTC SNDSIRSGVT NGSYKGNFLN
0601: YQNQKSPNKG KNQQVKMTSD ACSLVTVIDD DQPKSQNSSS ESDWVVVSHI QESESSRNRR PVGKLRNVAQ VIVNSARMDR LEEKSAAVLS SPRTAAKNPP
0701: PLTQTKQEKR SVSNADAVPN KKVMSATGPP SSSQVSPPSS DSQSQAGGLK ADIQKITAPK QPATTTVTRP SSAPIIPAMR PAPVIVSSSV QPTTPLPRSG
0801: RLGPDSSLRN HQTYTPQSYK HAIVGNSPGS SSSFNHHPSS HGVVPTTLPS ASYTQTPAYQ SSFPFGQDGS FRSRSFNSVN MGMNNRYTPA VASNTSLNHI
0901: DTETARQQAQ SLMTDEFPHL DIINDLLEDE NCGSMVFNGS IFNSEPQLFN NQYSYHGGEL LSSGRSRSFG DEGFHYMPRG PYAEGLIPTQ WQMANMDLSL
1001: LAMRNSNMED TASYHHTYNF GLDSTNQSFS SGINGYTEFR PSNGH
0101: ILIYPQGCDV CNHLSLFLCV ANHDKLLPGW SHFAQFTIAV VNKDPKKSKF SDTLHRFWKK EHDWGWKKFM ESTKLQDGFI DDSDSLTIEA QVQVIRERVD
0201: RPFRCLHCGY RRELVRVYLS NVEQNCRRFV EEKRSKLGRL IEDKARWTSF GVFWLGMDQN SRHRMSREKM DVILKGIVKH FFIEKEVTST LVMDSLYSGL
0301: KALEGQSKSK KARARSLDAK EYPAPIVSVD KDMFVLVDDV LLLLERAALE PLPPKENKAP QNRTKDGNDG EEVSNEAVER DERHLTELGR RAVEIFVLTH
0401: IFNSKIEVAY KEAIALKRQE DLIREEEEEW LAETEQRAKR GAAEREKKSK KKQAKQKRNK NKGKDKKKEE KVTLATHEKD LEENHHDEEE NDSVTEKAQP
0501: SAEKTDTLEE VSDISDSVDG SADILHPDLE DGDSSSVHWD ADALEIHPPP SEGSSISIST PNGIAERKNP STMDDSSSTC SNDSIRSGVT NGSYKGNFLN
0601: YQNQKSPNKG KNQQVKMTSD ACSLVTVIDD DQPKSQNSSS ESDWVVVSHI QESESSRNRR PVGKLRNVAQ VIVNSARMDR LEEKSAAVLS SPRTAAKNPP
0701: PLTQTKQEKR SVSNADAVPN KKVMSATGPP SSSQVSPPSS DSQSQAGGLK ADIQKITAPK QPATTTVTRP SSAPIIPAMR PAPVIVSSSV QPTTPLPRSG
0801: RLGPDSSLRN HQTYTPQSYK HAIVGNSPGS SSSFNHHPSS HGVVPTTLPS ASYTQTPAYQ SSFPFGQDGS FRSRSFNSVN MGMNNRYTPA VASNTSLNHI
0901: DTETARQQAQ SLMTDEFPHL DIINDLLEDE NCGSMVFNGS IFNSEPQLFN NQYSYHGGEL LSSGRSRSFG DEGFHYMPRG PYAEGLIPTQ WQMANMDLSL
1001: LAMRNSNMED TASYHHTYNF GLDSTNQSFS SGINGYTEFR PSNGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.