Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G094870.10 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | HORVU3Hr1G094870.10 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G310000.1 | Wheat | nucleus | 88.52 | 94.17 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 88.23 | 91.79 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 88.23 | 91.51 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 62.87 | 66.0 |
| EES01550 | Sorghum | nucleus | 56.73 | 64.13 |
| PGSC0003DMT400042094 | Potato | cytosol | 17.76 | 59.71 |
| Zm00001d043294_P006 | Maize | nucleus | 55.41 | 59.22 |
| AT5G52330.3 | Thale cress | cytosol | 17.03 | 58.69 |
| Solyc06g053740.2.1 | Tomato | cytosol | 16.16 | 53.12 |
| CDX73257 | Canola | cytosol | 15.13 | 50.99 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 51.97 | 49.44 |
| Bra023279.1-P | Field mustard | cytosol | 12.35 | 48.42 |
| CDX93823 | Canola | cytosol | 13.45 | 47.55 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 32.89 | 41.82 |
| AT4G16045.1 | Thale cress | cytosol | 11.62 | 41.62 |
| KRH34524 | Soybean | nucleus | 34.65 | 41.54 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 34.72 | 41.45 |
| KRH31732 | Soybean | nucleus | 34.5 | 41.44 |
| CDY26906 | Canola | cytosol | 6.65 | 41.36 |
| Bra010174.1-P | Field mustard | cytosol | 6.65 | 41.36 |
| KRG92287 | Soybean | nucleus | 33.84 | 40.61 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 33.04 | 40.25 |
| CDY10066 | Canola | nucleus | 29.46 | 39.74 |
| CDX86642 | Canola | nucleus | 30.19 | 39.52 |
| CDY01258 | Canola | cytosol | 5.92 | 39.51 |
| CDY32539 | Canola | nucleus | 28.95 | 39.36 |
| AT5G43560.1 | Thale cress | nucleus | 30.34 | 39.34 |
| CDX89828 | Canola | nucleus | 30.41 | 39.21 |
| Bra015302.1-P | Field mustard | nucleus | 30.26 | 39.06 |
| CDY01264 | Canola | cytosol | 5.85 | 39.02 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 35.01 | 39.01 |
| CDY18218 | Canola | nucleus | 30.04 | 38.85 |
| AT1G04300.3 | Thale cress | nucleus | 30.48 | 38.54 |
| Bra032518.1-P | Field mustard | nucleus | 28.0 | 38.53 |
| Solyc06g053750.2.1 | Tomato | nucleus | 31.65 | 38.05 |
| Solyc09g089560.2.1 | Tomato | nucleus | 30.56 | 37.86 |
| Solyc03g005430.2.1 | Tomato | nucleus | 31.29 | 37.25 |
| CDY22344 | Canola | nucleus | 23.32 | 34.41 |
| Bra033684.1-P | Field mustard | nucleus | 23.32 | 34.41 |
| CDX94711 | Canola | nucleus | 23.39 | 33.23 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 33.7 | 32.65 |
| HORVU3Hr1G075250.1 | Barley | cytosol | 5.99 | 22.28 |
| PGSC0003DMT400042093 | Potato | nucleus | 10.38 | 21.26 |
| HORVU5Hr1G031980.4 | Barley | cytosol | 11.92 | 14.55 |
| HORVU4Hr1G034950.2 | Barley | cytosol | 11.7 | 14.31 |
| HORVU2Hr1G058700.4 | Barley | cytosol | 11.33 | 13.89 |
| HORVU3Hr1G075220.5 | Barley | endoplasmic reticulum | 5.63 | 10.01 |
| HORVU0Hr1G030140.1 | Barley | mitochondrion | 1.17 | 8.56 |
| HORVU4Hr1G071690.9 | Barley | nucleus | 5.48 | 8.23 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.1 | 7.54 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 8.85 | 7.24 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G075800.5 | EnsemblPlantsGene:HORVU3Hr1G075800 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000B4888C7 |
| UniProt:A0A287LQL2 | MapMan:22.5.1.6 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:566001489..566014733
Molecular Weight (calculated)
150002.0 Da
IEP (calculated)
8.656
GRAVY (calculated)
-0.665
Length
1368 amino acids
Sequence
(BLAST)
(BLAST)
0001: SSRFFPFRSV PSVVVSSRDA ISTPNLHYNP LPPPPADLAA PKPRDPKPHR PPQQKQDPPL GLRSASSAVL VDSMAGAPES RGSGVRRIPP RRVTTSTSGS
0101: SCPCCYDNTH WGRKDKKVVA KLKLDLFVKS LKSGAMLADE LGDEDQSVSG DSLSEWRSCD QVDNGSPSTS PPFWDTDGED DDPGPCPSNL FGRHTWRIQN
0201: FSKEKKREMK SEPFEAGGFK WYILVYPQGC DVSNHLSLFL CVADHDKLLP GWSQFAQFTI AVGNLDPKKV KYSDTLHKFW KKEHDWGWKK FMELSKIQDG
0301: FLVNDVLEII AQVQVIREKV DRPFRCLERP YRRELLRVYM TNIEQIYRRF VEEHRSKLSN LIEDKMRWSS FCAFWLAIDT STRYRMSREK SDVILKIIVK
0401: HFFVEKEVTS TLVMDSLHTG LKALEHQCRG KKGRGKLMDL EELSAPLVHV DMDTFALAGD VLALLERAAL EPLPCQPLSP KDDKCSQSRT KAGSSGEVKV
0501: SIEHEEKRLT EFGQKILETF VLSHIFSGIE VAYQEAVSLK RQEELIREEE EAGLLESEMK GKRNNTTEKE KRAKKKQAKQ KKNNRKVKDK DREEKSDSNF
0601: AEKDQDESTI HDIEDSKQAG QVAMKVDTSE EGASDISDNL DGSAEACQTD AGDKISQPVD GVNDVGIEMK NVHTGKNSTV EHKPLPCSSE SATMNIMQGK
0701: RNNLLDSSTQ ISLHRGKTPR TRVISSMNVA KDEDDLPSST TGDLDRNTSG CGPAPKLDQE TVLITLKDRL RKLGQRLHET ETEGRKLEAH LEKKAAAKAA
0801: SSSSSSSSLE KTPNVVNSPE QPSVTSPDAS MYAPPHSQPV MTNGANGAIP ATPKTTVSTK SGPTVAPSKV KPALCKENVP SLNLKIDRAA SVTPRSLPVD
0901: KAATLPSSSS LANKAIPVPP QSSAPRVAKA TKGIPALPKP SAQANKVTKA APVPLKSPTP QVEKVAKAIP ALPKSLAPQV NKVAPPNNAA PLQLPSVSYS
1001: EARKGAVPKK IVGTSVPRTP TAVSRPSSAP LFQAPRSTLP PIPGAQVPPS QSRSLTASRR PSNEPSAPVP SYVPQSYRNA IIGKGSLDTI LSSSDKVTSP
1101: GQSNAISQPP SAYALGTSAM LPPVGRNGQL PGNQGLMSGQ GKLDTFDSWH PWKGVSDAKR HMPNDDTKYQ QMTNGDACIR PWSDNSYQQA SNSGTEEQGR
1201: FGGIQHRQFQ SEIPTNFDSH QLQGSVGEEF PHLGIINDLL EEEQSNVSLA EPPIHEYHPF GLPFSPGGNF AEADMTSSRG SGRLNLNGHY YDRLNALHRP
1301: GEGQFSTLDA YSNGMADSFL SKPWLYSYPN PMVNPGVNGF AQQMGDYTNY AGGRANEEYM YRLANGQW
0101: SCPCCYDNTH WGRKDKKVVA KLKLDLFVKS LKSGAMLADE LGDEDQSVSG DSLSEWRSCD QVDNGSPSTS PPFWDTDGED DDPGPCPSNL FGRHTWRIQN
0201: FSKEKKREMK SEPFEAGGFK WYILVYPQGC DVSNHLSLFL CVADHDKLLP GWSQFAQFTI AVGNLDPKKV KYSDTLHKFW KKEHDWGWKK FMELSKIQDG
0301: FLVNDVLEII AQVQVIREKV DRPFRCLERP YRRELLRVYM TNIEQIYRRF VEEHRSKLSN LIEDKMRWSS FCAFWLAIDT STRYRMSREK SDVILKIIVK
0401: HFFVEKEVTS TLVMDSLHTG LKALEHQCRG KKGRGKLMDL EELSAPLVHV DMDTFALAGD VLALLERAAL EPLPCQPLSP KDDKCSQSRT KAGSSGEVKV
0501: SIEHEEKRLT EFGQKILETF VLSHIFSGIE VAYQEAVSLK RQEELIREEE EAGLLESEMK GKRNNTTEKE KRAKKKQAKQ KKNNRKVKDK DREEKSDSNF
0601: AEKDQDESTI HDIEDSKQAG QVAMKVDTSE EGASDISDNL DGSAEACQTD AGDKISQPVD GVNDVGIEMK NVHTGKNSTV EHKPLPCSSE SATMNIMQGK
0701: RNNLLDSSTQ ISLHRGKTPR TRVISSMNVA KDEDDLPSST TGDLDRNTSG CGPAPKLDQE TVLITLKDRL RKLGQRLHET ETEGRKLEAH LEKKAAAKAA
0801: SSSSSSSSLE KTPNVVNSPE QPSVTSPDAS MYAPPHSQPV MTNGANGAIP ATPKTTVSTK SGPTVAPSKV KPALCKENVP SLNLKIDRAA SVTPRSLPVD
0901: KAATLPSSSS LANKAIPVPP QSSAPRVAKA TKGIPALPKP SAQANKVTKA APVPLKSPTP QVEKVAKAIP ALPKSLAPQV NKVAPPNNAA PLQLPSVSYS
1001: EARKGAVPKK IVGTSVPRTP TAVSRPSSAP LFQAPRSTLP PIPGAQVPPS QSRSLTASRR PSNEPSAPVP SYVPQSYRNA IIGKGSLDTI LSSSDKVTSP
1101: GQSNAISQPP SAYALGTSAM LPPVGRNGQL PGNQGLMSGQ GKLDTFDSWH PWKGVSDAKR HMPNDDTKYQ QMTNGDACIR PWSDNSYQQA SNSGTEEQGR
1201: FGGIQHRQFQ SEIPTNFDSH QLQGSVGEEF PHLGIINDLL EEEQSNVSLA EPPIHEYHPF GLPFSPGGNF AEADMTSSRG SGRLNLNGHY YDRLNALHRP
1301: GEGQFSTLDA YSNGMADSFL SKPWLYSYPN PMVNPGVNGF AQQMGDYTNY AGGRANEEYM YRLANGQW
0001: MSESTNEDSG AGRSSLEENS NGQRSQSEEA IAEWRSSEQV ENGTPSTSPP YWDIDDDDDF GSKPSQLFGK NTWTIEKFSD INKRELRGDV FEVGGYKWYI
0101: LIYPQGCDVC NHLSLFLCVA HHEKLLPGWS HFAQFTIAVS NKDPKKSKHS DTLHRFWKKE HDWGWKKFIE LPKLKEGFID DSGCLTIKAQ VQVIRERVDR
0201: PFRCLHYKYR EELVRVYLGN VEQICWRFVE EKRSKLGRLI EDKAKWKSFC AFWMGLDQNS RRRMSREKMD VILKIVVKHF FVEKEVTSTL VMDSLYSGLK
0301: ALEGQNKNKE SRPRLMDTEE STAPIVSVDK DSFALVDDVL LLLEKAALEP LPKKEEKSSQ NRTKDGNAGE EFSREAVERD DRRLTELGRR TVEIFVLAHI
0401: FSNKIEVAYQ EAIAWKRQEE LIREEEEAWL AESEQKGKRG ASEKEKKSKK KQAKQKKNKN KGKEMRKEDK VRTQTEEREI EKEECVRAIA ESSAEKPDTL
0501: GDVSDVSDSV DSSAEILQLD SEDRESSPVH WEMDASEVHP PSAGDTSRGR GNSFSIPNGV AERKGLSTMD DSSSTCSNDS IQSGVANGSY KGNVLNCQSQ
0601: KWFSNGKIQP GKVSDSNSLA SEKEHQPSRL ASDPKNQSHS SDIRRVGEAD IVISHIQKPE SPKERSPVSK DPNMIQMKEK SAAVLSPSRA APWNPPSPVQ
0701: AKPEKKGVSN VEAVPNRKVI SVKSPSSHHA SPSREAQLQT VGPRADIQKI ASPKPVEQPA PPMSRPLSAP IIPPTQAAPV ISAVQTSTAS LARSMSSTGR
0801: LGSPTHSQAY NPQSYKHAIV GSSGFTHPSS QSSGTSTLPP YSHPSPISVS NQSGFPINVG SWDVSSGGLL WTGGSSSTRD TTTTISGNHK TNTYNAPVVT
0901: TSIRPTNVQI GRTAQSLMTD EFPHLDIIND LLADEHGTMD NSVYRVPQQF NNQYSYHGGA DLGISSRSRS YSDDGFHQSY GEYMPHSASS SPYGNGQTQS
1001: QWQMANMDFS LPAMRNQDDV SASATATYSY FDLDSSNPNL SGINGYRDFR PSNGH
0101: LIYPQGCDVC NHLSLFLCVA HHEKLLPGWS HFAQFTIAVS NKDPKKSKHS DTLHRFWKKE HDWGWKKFIE LPKLKEGFID DSGCLTIKAQ VQVIRERVDR
0201: PFRCLHYKYR EELVRVYLGN VEQICWRFVE EKRSKLGRLI EDKAKWKSFC AFWMGLDQNS RRRMSREKMD VILKIVVKHF FVEKEVTSTL VMDSLYSGLK
0301: ALEGQNKNKE SRPRLMDTEE STAPIVSVDK DSFALVDDVL LLLEKAALEP LPKKEEKSSQ NRTKDGNAGE EFSREAVERD DRRLTELGRR TVEIFVLAHI
0401: FSNKIEVAYQ EAIAWKRQEE LIREEEEAWL AESEQKGKRG ASEKEKKSKK KQAKQKKNKN KGKEMRKEDK VRTQTEEREI EKEECVRAIA ESSAEKPDTL
0501: GDVSDVSDSV DSSAEILQLD SEDRESSPVH WEMDASEVHP PSAGDTSRGR GNSFSIPNGV AERKGLSTMD DSSSTCSNDS IQSGVANGSY KGNVLNCQSQ
0601: KWFSNGKIQP GKVSDSNSLA SEKEHQPSRL ASDPKNQSHS SDIRRVGEAD IVISHIQKPE SPKERSPVSK DPNMIQMKEK SAAVLSPSRA APWNPPSPVQ
0701: AKPEKKGVSN VEAVPNRKVI SVKSPSSHHA SPSREAQLQT VGPRADIQKI ASPKPVEQPA PPMSRPLSAP IIPPTQAAPV ISAVQTSTAS LARSMSSTGR
0801: LGSPTHSQAY NPQSYKHAIV GSSGFTHPSS QSSGTSTLPP YSHPSPISVS NQSGFPINVG SWDVSSGGLL WTGGSSSTRD TTTTISGNHK TNTYNAPVVT
0901: TSIRPTNVQI GRTAQSLMTD EFPHLDIIND LLADEHGTMD NSVYRVPQQF NNQYSYHGGA DLGISSRSRS YSDDGFHQSY GEYMPHSASS SPYGNGQTQS
1001: QWQMANMDFS LPAMRNQDDV SASATATYSY FDLDSSNPNL SGINGYRDFR PSNGH
Arabidopsis Description
TRAF1AMATH domain-containing protein At5g43560 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.