Factsheet for PGSC0003DMT400042094

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400084727

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43560.1	PGSC0003DMT400084727	AT1G27320.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053740.2.1	Tomato	cytosol	83.05	81.25
AT5G52330.3	Thale cress	cytosol	57.49	58.94
OQU79503	Sorghum	nucleus	62.41	56.07
Os05t0508700-01	Rice	nucleus	61.92	32.68
VIT_05s0020g04980.t01	Wine grape	nucleus	79.12	28.1
KRH31732	Soybean	nucleus	76.66	27.39
KRG92287	Soybean	nucleus	74.94	26.75
CDY32539	Canola	nucleus	66.09	26.74
KRH34524	Soybean	nucleus	74.69	26.64
CDY10066	Canola	nucleus	65.85	26.43
CDX86642	Canola	nucleus	67.57	26.32
AT5G43560.1	Thale cress	nucleus	67.81	26.16
GSMUA_Achr2P12590_001	Banana	nucleus	68.8	26.02
CDY18218	Canola	nucleus	67.08	25.8
AT1G04300.3	Thale cress	nucleus	68.3	25.69
CDX89828	Canola	nucleus	66.83	25.64
Bra015302.1-P	Field mustard	nucleus	66.58	25.57
KRG90366	Soybean	endoplasmic reticulum, plasma membrane	76.41	25.33
Bra032518.1-P	Field mustard	nucleus	61.67	25.25
TraesCS5B01G071600.1	Wheat	nucleus	67.32	24.42
TraesCS5D01G072000.1	Wheat	nucleus	67.08	24.31
HORVU5Hr1G016190.3	Barley	nucleus	66.83	24.22
TraesCS5A01G060400.1	Wheat	nucleus	66.83	24.22
EES16279	Sorghum	nucleus	63.64	23.08
EES01550	Sorghum	nucleus	61.18	20.58
Os01t0775300-01	Rice	cytosol, mitochondrion, nucleus	62.41	19.49
KXG22306	Sorghum	nucleus	61.43	19.41
GSMUA_Achr5P03190_001	Banana	nucleus	65.85	18.98
TraesCS3D01G310000.1	Wheat	nucleus	59.21	18.74
TraesCS1B01G339200.1	Wheat	nucleus	63.15	18.54
TraesCS1A01G325900.1	Wheat	nucleus	62.9	18.44
TraesCS1D01G327700.1	Wheat	nucleus	62.9	18.44
TraesCS3A01G321300.2	Wheat	nucleus	59.46	18.4
TraesCS3B01G343300.2	Wheat	nucleus	59.46	18.35
HORVU3Hr1G075800.5	Barley	cytosol, nucleus, plastid	59.71	17.76
HORVU1Hr1G078170.6	Barley	cytosol	62.41	17.66
PGSC0003DMT400007793	Potato	cytosol	23.59	8.64
PGSC0003DMT400072539	Potato	cytosol	23.59	8.56
PGSC0003DMT400047482	Potato	nucleus	6.63	4.82
PGSC0003DMT400042093	Potato	nucleus	0.74	0.45
PGSC0003DMT400047483	Potato	nucleus	0.49	0.34
PGSC0003DMT400044267	Potato	nucleus	0.0	0.0
Os12t0597200-01	Rice	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400042094	EnsemblPlantsGene:PGSC0003DMG402016322	EntrezGene:102590534	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR45001
PFAM:PF00917	PFscan:PS50144	PGSC:PGSC0003DMG402016322	RefSeq:XP_006350675.1	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI0002963257	UniProt:M1BCH8	MapMan:22.5.1.6	:	:

Description

MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402016322]

Coordinates

chr6:+:39855344..39862121

Molecular Weight (calculated)

46611.5 Da

IEP (calculated)

6.110

GRAVY (calculated)

-0.437

Length

407 amino acids

Sequence
(BLAST)

001: MVSSASEEAG IGKSLEGVSK GQQMENGTPL TSPPYWDSDD DGGPKPVELY GKYTWKIDKF SQINKRELRS NVFEVGGYKW YILIYPQGCD VSSHLSLFLC
101: VANHDNLLPG WSHLAQFTIS VVNKDPKKSK YSDTLHHFWK KEHDWGWKKF MDLSKVVDGF LDSDTLIIKA QVQVIMERAD RPFHCLDFQY RRELVRVYLT
201: DVEKICHHFV AERRGKLGKF IGDKARWSSF CAFWLGIDQN SRRRMSREKS DQILKMVVKN FFIEKEVTST LVMDSLYSGL KALVGQSNGQ TGKGKHLDAV
301: EQTVPIVSME NDMFVLVDDV LILLERAVLE PFPPKDEKGP QNHTNEDTSG EDTNRDSIQR DERLLTELGR QTIEIFVFAH IFSKIEVAYE EAVALKKLEE
401: LSTEEAV

Best Arabidopsis Sequence Match ( AT1G04300.1 )
(BLAST)

0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH

Arabidopsis Description

TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.