CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG34012

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43560.1	KXG34012	AT1G27320.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030958_P001	Maize	nucleus	82.34	81.8
PGSC0003DMT400042094	Potato	cytosol	56.07	62.41
Solyc06g053740.2.1	Tomato	cytosol	51.88	56.49
AT5G52330.3	Thale cress	cytosol	49.23	56.17
CDX73257	Canola	cytosol	45.92	51.23
Bra023279.1-P	Field mustard	cytosol	36.42	47.28
CDX93823	Canola	cytosol	39.74	46.51
CDY01258	Canola	cytosol	17.0	37.56
Bra010174.1-P	Field mustard	cytosol	18.1	37.27
CDY26906	Canola	cytosol	18.1	37.27
CDY01264	Canola	cytosol	16.56	36.59
AT4G16045.1	Thale cress	cytosol	30.68	36.39
EES16279	Sorghum	nucleus	86.75	35.03
TraesCS5B01G071600.1	Wheat	nucleus	79.91	32.26
TraesCS5D01G072000.1	Wheat	nucleus	79.91	32.24
HORVU5Hr1G016190.3	Barley	nucleus	79.69	32.15
TraesCS5A01G060400.1	Wheat	nucleus	79.69	32.15
GSMUA_Achr2P12590_001	Banana	nucleus	66.89	28.16
CDY32539	Canola	nucleus	60.49	27.24
CDY10066	Canola	nucleus	60.71	27.12
Solyc09g089560.2.1	Tomato	nucleus	65.56	26.9
KRH31732	Soybean	nucleus	67.33	26.78
CDY18218	Canola	nucleus	62.47	26.75
VIT_05s0020g04980.t01	Wine grape	nucleus	67.55	26.7
CDX86642	Canola	nucleus	61.59	26.7
CDX89828	Canola	nucleus	62.47	26.67
Bra015302.1-P	Field mustard	nucleus	62.03	26.51
AT5G43560.1	Thale cress	nucleus	61.59	26.45
KRG92287	Soybean	nucleus	66.0	26.23
KRH34524	Soybean	nucleus	66.0	26.21
Solyc03g005430.2.1	Tomato	nucleus	66.23	26.11
AT1G04300.3	Thale cress	nucleus	62.25	26.06
Bra032518.1-P	Field mustard	nucleus	56.51	25.75
Solyc06g053750.2.1	Tomato	nucleus	63.13	25.13
KRG90366	Soybean	endoplasmic reticulum, plasma membrane	66.89	24.67
CDY22344	Canola	nucleus	47.46	23.19
Bra033684.1-P	Field mustard	nucleus	47.46	23.19
EES01550	Sorghum	nucleus	60.93	22.81
KXG22306	Sorghum	nucleus	63.58	22.36
CDX94711	Canola	nucleus	47.02	22.12
GSMUA_Achr5P03190_001	Banana	nucleus	65.34	20.96
EES15989	Sorghum	cytosol	23.18	9.36
KXG34448	Sorghum	nucleus	22.74	9.21
EES09985	Sorghum	cytosol	22.74	9.21
KXG33467	Sorghum	nucleus	21.41	8.68
Bra041162.1-P	Field mustard	cytosol, nucleus, plastid	2.65	6.03
OQU79121	Sorghum	nucleus	8.39	3.75
EES07147	Sorghum	nucleus, plastid	13.02	3.54
Os12t0597200-01	Rice	cytosol, nucleus, plastid	0.0	0.0
PGSC0003DMT400042093	Potato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:OQU79503	EnsemblPlantsGene:SORBI_3008G152900	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	ncoils:Coil	PANTHER:PTHR45001
PFAM:PF00917	PFscan:PS50144	ProteinID:OQU79503	ProteinID:OQU79503.1	SEG:seg	SMART:SM00061
SUPFAM:SSF49599	UniParc:UPI000B4248E2	UniProt:A0A1Z5R6W5	MapMan:22.5.1.6	:	:

Description

hypothetical protein

Coordinates

chr8:+:58524928..58532357

Molecular Weight (calculated)

52684.1 Da

IEP (calculated)

6.583

GRAVY (calculated)

-0.728

Length

453 amino acids

Sequence
(BLAST)

001: MAGTYNAGDG RSSSTEEMSD QQDHSENTLS EWRSSQQVEN GIPSTSPAYL DTDDDDDDDY GPRPSELYGN FTWRIDHFSQ INRSELRSNS FDVGGYKWYI
101: LIYPQGCDVC NHLSLFLCVA NHDKLLPGWN HFAQFTIAVI NRDPKKSKYS DTLHRFRKKE HDWGWKKFME LSKLHDGFIV EDVLTIKAQV QVIREKTDRP
201: FRSLDGQYRR ELIRVYLSNV EKICRRFNDE RRSKLSRLIE DKLGWSSFCG FWLAMDPSVR RHMTREKTET ILKNLVKQFF IQKEITSTLV IDSLYSGLKA
301: LEYQSRNKKG IPKLTETDAQ STPMVHIDQD MFVLADDVIL LLERAALDTL PHQPLPTQDD EGSQYHTKDG KSSNKFDKDS IERDDRWLTE LGWKTLELFA
401: LAHIFSRIEV AYQEAMALKR QEELILEEAS ERAGIELKAK RSAADKKRRG KNM

Best Arabidopsis Sequence Match ( AT5G43560.1 )
(BLAST)

0001: MSESTNEDSG AGRSSLEENS NGQRSQSEEA IAEWRSSEQV ENGTPSTSPP YWDIDDDDDF GSKPSQLFGK NTWTIEKFSD INKRELRGDV FEVGGYKWYI
0101: LIYPQGCDVC NHLSLFLCVA HHEKLLPGWS HFAQFTIAVS NKDPKKSKHS DTLHRFWKKE HDWGWKKFIE LPKLKEGFID DSGCLTIKAQ VQVIRERVDR
0201: PFRCLHYKYR EELVRVYLGN VEQICWRFVE EKRSKLGRLI EDKAKWKSFC AFWMGLDQNS RRRMSREKMD VILKIVVKHF FVEKEVTSTL VMDSLYSGLK
0301: ALEGQNKNKE SRPRLMDTEE STAPIVSVDK DSFALVDDVL LLLEKAALEP LPKKEEKSSQ NRTKDGNAGE EFSREAVERD DRRLTELGRR TVEIFVLAHI
0401: FSNKIEVAYQ EAIAWKRQEE LIREEEEAWL AESEQKGKRG ASEKEKKSKK KQAKQKKNKN KGKEMRKEDK VRTQTEEREI EKEECVRAIA ESSAEKPDTL
0501: GDVSDVSDSV DSSAEILQLD SEDRESSPVH WEMDASEVHP PSAGDTSRGR GNSFSIPNGV AERKGLSTMD DSSSTCSNDS IQSGVANGSY KGNVLNCQSQ
0601: KWFSNGKIQP GKVSDSNSLA SEKEHQPSRL ASDPKNQSHS SDIRRVGEAD IVISHIQKPE SPKERSPVSK DPNMIQMKEK SAAVLSPSRA APWNPPSPVQ
0701: AKPEKKGVSN VEAVPNRKVI SVKSPSSHHA SPSREAQLQT VGPRADIQKI ASPKPVEQPA PPMSRPLSAP IIPPTQAAPV ISAVQTSTAS LARSMSSTGR
0801: LGSPTHSQAY NPQSYKHAIV GSSGFTHPSS QSSGTSTLPP YSHPSPISVS NQSGFPINVG SWDVSSGGLL WTGGSSSTRD TTTTISGNHK TNTYNAPVVT
0901: TSIRPTNVQI GRTAQSLMTD EFPHLDIIND LLADEHGTMD NSVYRVPQQF NNQYSYHGGA DLGISSRSRS YSDDGFHQSY GEYMPHSASS SPYGNGQTQS
1001: QWQMANMDFS LPAMRNQDDV SASATATYSY FDLDSSNPNL SGINGYRDFR PSNGH

Arabidopsis Description

TRAF1AMATH domain-containing protein At5g43560 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY18]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.