Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU79503 | Sorghum | nucleus | 81.8 | 82.34 |
| Zm00001d030960_P003 | Maize | nucleus | 80.48 | 32.65 |
| Zm00001d041395_P002 | Maize | nucleus | 77.63 | 31.86 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 73.9 | 30.01 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 73.68 | 29.95 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 73.68 | 29.92 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 73.25 | 29.74 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 62.06 | 26.3 |
| Zm00001d038655_P003 | Maize | nucleus | 58.77 | 20.62 |
| Zm00001d043294_P006 | Maize | nucleus | 56.58 | 20.16 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 62.06 | 20.04 |
| Zm00001d010716_P002 | Maize | nucleus | 51.1 | 17.71 |
| Zm00001d041035_P002 | Maize | cytosol | 22.15 | 8.87 |
| Zm00001d023640_P004 | Maize | cytosol | 21.93 | 8.83 |
| Zm00001d043312_P001 | Maize | nucleus | 21.05 | 8.59 |
| Zm00001d018859_P010 | Maize | cytosol | 21.05 | 8.55 |
| Zm00001d007904_P003 | Maize | cytosol | 21.05 | 8.27 |
| Zm00001d052943_P023 | Maize | plastid | 20.61 | 7.02 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 8.55 | 3.58 |
| Zm00001d028177_P004 | Maize | cytosol | 8.33 | 3.54 |
| Zm00001d051075_P002 | Maize | nucleus | 12.28 | 3.31 |
| Zm00001d034390_P001 | Maize | nucleus | 0.0 | 0.0 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d030958_P001 | EnsemblPlants:Zm00001d030958_T001 | EnsemblPlantsGene:Zm00001d030958 | EntrezGene:103640538 | Gene3D:2.60.210.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like |
| PANTHER:PTHR45001 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:ONM01800.1 | ProteinID:ONM01801.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000182CD76 | UniProt:A0A1D6KF93 | MapMan:22.5.1.6 | : |
Description
TRAF-like superfamily protein
Coordinates
chr1:+:169037521..169044042
Molecular Weight (calculated)
53085.7 Da
IEP (calculated)
6.374
GRAVY (calculated)
-0.673
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGALAEDNA GDGRSSSTEE MSSDDQIHSE NPLSEWRSSQ QVENRVPPTL RIYLGNDDDD DFSYGPRPSE LYGKFTWRID YFSQINRSEL RSTSFDVGAY
101: KWYILIYPRG CGVCDHLSLF LCADHNKLLP GWSHFAQFTI ALINKDPKKS KYSDTLHRFW KKEHDWGWKK FMELSELHDG FIVQDALTIK AQVQVIREKI
201: DRPFRCLDGQ YRRELIRVYL STVEQIYRRF IDEKRRMFSR LIEDKLGWSS FSGFWLAMDP SVRRHMTREK TETILKVVVK QFFIEKEVTS TLVFDSLYSG
301: LKALEYQSNN KKGIPKITEA DARSTPMVLI DQDMFVLADD ALLLFERAAL DTQSHQPLPK KDDKGSPNRT KDDTSSDEFD KDSIERDDRW LEELGCKTLE
401: LFAVTHIFSR AEAAYQEAMA LQLQEELIRE EASERAGTEL KPKRRAADKK RRGKNM
101: KWYILIYPRG CGVCDHLSLF LCADHNKLLP GWSHFAQFTI ALINKDPKKS KYSDTLHRFW KKEHDWGWKK FMELSELHDG FIVQDALTIK AQVQVIREKI
201: DRPFRCLDGQ YRRELIRVYL STVEQIYRRF IDEKRRMFSR LIEDKLGWSS FSGFWLAMDP SVRRHMTREK TETILKVVVK QFFIEKEVTS TLVFDSLYSG
301: LKALEYQSNN KKGIPKITEA DARSTPMVLI DQDMFVLADD ALLLFERAAL DTQSHQPLPK KDDKGSPNRT KDDTSSDEFD KDSIERDDRW LEELGCKTLE
401: LFAVTHIFSR AEAAYQEAMA LQLQEELIRE EASERAGTEL KPKRRAADKK RRGKNM
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.