Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041395_P002 | Maize | nucleus | 87.37 | 88.39 |
| Zm00001d030958_P001 | Maize | nucleus | 32.65 | 80.48 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 74.47 | 74.53 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 74.47 | 74.53 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 74.2 | 74.33 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 74.11 | 74.18 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 17.35 | 63.11 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 48.13 | 50.28 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 49.02 | 39.02 |
| Zm00001d038655_P003 | Maize | nucleus | 40.93 | 35.38 |
| Zm00001d043294_P006 | Maize | nucleus | 38.97 | 34.22 |
| Zm00001d010716_P002 | Maize | nucleus | 37.46 | 31.99 |
| Zm00001d034390_P001 | Maize | nucleus | 5.78 | 25.19 |
| Zm00001d023640_P004 | Maize | cytosol | 14.5 | 14.4 |
| Zm00001d041035_P002 | Maize | cytosol | 14.15 | 13.96 |
| Zm00001d018859_P010 | Maize | cytosol | 13.35 | 13.36 |
| Zm00001d007904_P003 | Maize | cytosol | 13.79 | 13.35 |
| Zm00001d043312_P001 | Maize | nucleus | 12.9 | 12.98 |
| Zm00001d052943_P023 | Maize | plastid | 12.72 | 10.68 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 7.38 | 7.62 |
| Zm00001d051075_P002 | Maize | nucleus | 11.03 | 7.32 |
| Zm00001d028177_P004 | Maize | cytosol | 6.85 | 7.18 |
Protein Annotations
| EnsemblPlants:Zm00001d030960_P003 | EnsemblPlants:Zm00001d030960_T003 | EnsemblPlantsGene:Zm00001d030960 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil |
| PANTHER:PTHR45001 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:ONM01818.1 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI000845100A | UniProt:A0A1D6KF97 | MapMan:22.5.1.6 | : | : |
Description
TRAF-like superfamily protein
Coordinates
chr1:+:169229522..169239762
Molecular Weight (calculated)
124421.0 Da
IEP (calculated)
7.057
GRAVY (calculated)
-0.702
Length
1124 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGTLTEDNG GDARSSSTEE MPSDQQSHSG DSLAEWRSSE QVENGTPSTS PAYSDTDDDD CGPRPSELYG KFTWRIDNFS QINKRELRSN SFDVGGYKWY
0101: ILIYPQGCDV CNHLSLFLCV ANHDKLLPGW SHFAQFTIAV INRDPKKSKY SDTLHRFWKK EHDWGWKKFM ELSKLHDGFI VEDVLTIKAQ VQVIREKTDR
0201: PFRCLDGQYR RELIRVYLSN VEQICRRFID ERRSKLSRLI ADKLGWSSFS GFWLAMDPSV RRHMTREKTE TILKVLVKQF FIEKEVTSTL VIDSLYSGLK
0301: ALEYQSKNKK GIPKLTETDA RSTPMVLIDQ DMFVLADDVI LLLERAALDT LPHQPLPTKD DKSSQNRTKV GMFDGNSGEE FSKDSIERDD RRLIELGWKT
0401: LELFALTHIF SRIEVAHQEA VALKRQEELI REEEAAGLAE IELKAKRSAA EKEKRAKKKQ AKQKKNSRRS NKGKSGKSDI NKEILMYSSP SGDRILDDFS
0501: GQTEEMSSNA DNPEEVSDIS DSRDDNSDAL HVDIEDRESS PVNWETDASE TQATVPGSSE VQNDHAGKRT STVDDSSSTC SSDSVPSVIV NGSYTGGAWT
0601: SVRSLSNRGN NRRNKDTEAR AALAQGGSSS AHNGFIGSGG SASGHSKERY EPEDDKVVMQ RKQHARHIDV ISPSKSRMAV SSFSSVSPVK KQPNLSHQPK
0701: FLLESTNSSN HRASEVSGAV TATTTAGASS TLAAQLVSNK GPVSSAATRN EKPVLVTNKP LQVLVPSKSE AQKQASLTGS ASTQVVSVSR PLSAPQVPAA
0801: KQSVPATTAQ NAPLLSRSVS AVGRLGNEPS ANAPSFIPRS RTYRNAMMEK SSGGVSSLTH QQGSSEQAVA PSQSMFTSQP SILSSETLSM KEETSLRPGF
0901: TFGTVKPESL NPYQGREENS LQASSSSSSD CTPSSSNIRS EIAKLSLNGR SRSKQLLSEI STRFTPYQPQ GLVADEFPHL DIINDLLDEE QSDRRRVLQP
1001: GFVQQFSVHN GVSAPDYGLF SEPYLFDRSE QYFDEEPPRF YSPLSSAPRR MRDRSYSHFD LPSYSRSSQL DGLLMSQWPP YSRADLAMPG FGSDTGGYSY
1101: QPQGFPSPAS AASRYPSYRP ANGH
0101: ILIYPQGCDV CNHLSLFLCV ANHDKLLPGW SHFAQFTIAV INRDPKKSKY SDTLHRFWKK EHDWGWKKFM ELSKLHDGFI VEDVLTIKAQ VQVIREKTDR
0201: PFRCLDGQYR RELIRVYLSN VEQICRRFID ERRSKLSRLI ADKLGWSSFS GFWLAMDPSV RRHMTREKTE TILKVLVKQF FIEKEVTSTL VIDSLYSGLK
0301: ALEYQSKNKK GIPKLTETDA RSTPMVLIDQ DMFVLADDVI LLLERAALDT LPHQPLPTKD DKSSQNRTKV GMFDGNSGEE FSKDSIERDD RRLIELGWKT
0401: LELFALTHIF SRIEVAHQEA VALKRQEELI REEEAAGLAE IELKAKRSAA EKEKRAKKKQ AKQKKNSRRS NKGKSGKSDI NKEILMYSSP SGDRILDDFS
0501: GQTEEMSSNA DNPEEVSDIS DSRDDNSDAL HVDIEDRESS PVNWETDASE TQATVPGSSE VQNDHAGKRT STVDDSSSTC SSDSVPSVIV NGSYTGGAWT
0601: SVRSLSNRGN NRRNKDTEAR AALAQGGSSS AHNGFIGSGG SASGHSKERY EPEDDKVVMQ RKQHARHIDV ISPSKSRMAV SSFSSVSPVK KQPNLSHQPK
0701: FLLESTNSSN HRASEVSGAV TATTTAGASS TLAAQLVSNK GPVSSAATRN EKPVLVTNKP LQVLVPSKSE AQKQASLTGS ASTQVVSVSR PLSAPQVPAA
0801: KQSVPATTAQ NAPLLSRSVS AVGRLGNEPS ANAPSFIPRS RTYRNAMMEK SSGGVSSLTH QQGSSEQAVA PSQSMFTSQP SILSSETLSM KEETSLRPGF
0901: TFGTVKPESL NPYQGREENS LQASSSSSSD CTPSSSNIRS EIAKLSLNGR SRSKQLLSEI STRFTPYQPQ GLVADEFPHL DIINDLLDEE QSDRRRVLQP
1001: GFVQQFSVHN GVSAPDYGLF SEPYLFDRSE QYFDEEPPRF YSPLSSAPRR MRDRSYSHFD LPSYSRSSQL DGLLMSQWPP YSRADLAMPG FGSDTGGYSY
1101: QPQGFPSPAS AASRYPSYRP ANGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.