Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034390_P001 | Maize | nucleus | 19.23 | 96.9 |
| KXG22306 | Sorghum | nucleus | 90.31 | 91.15 |
| Zm00001d010716_P002 | Maize | nucleus | 83.15 | 82.14 |
| Os05t0508700-01 | Rice | nucleus | 41.85 | 70.56 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 67.77 | 63.56 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 67.54 | 63.26 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 67.08 | 62.82 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 66.23 | 59.87 |
| Zm00001d030958_P001 | Maize | nucleus | 20.62 | 58.77 |
| Zm00001d043294_P006 | Maize | nucleus | 47.92 | 48.67 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 35.23 | 42.57 |
| Zm00001d030960_P003 | Maize | nucleus | 35.38 | 40.93 |
| Zm00001d041395_P002 | Maize | nucleus | 34.38 | 40.23 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 36.08 | 33.22 |
| Zm00001d023640_P004 | Maize | cytosol | 12.23 | 14.05 |
| Zm00001d041035_P002 | Maize | cytosol | 11.92 | 13.61 |
| Zm00001d018859_P010 | Maize | cytosol | 11.08 | 12.82 |
| Zm00001d043312_P001 | Maize | nucleus | 10.85 | 12.62 |
| Zm00001d007904_P003 | Maize | cytosol | 11.15 | 12.49 |
| Zm00001d052943_P023 | Maize | plastid | 10.85 | 10.53 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 6.38 | 7.62 |
| Zm00001d028177_P004 | Maize | cytosol | 6.23 | 7.55 |
| Zm00001d051075_P002 | Maize | nucleus | 8.85 | 6.79 |
Protein Annotations
| EnsemblPlants:Zm00001d038655_P003 | EnsemblPlants:Zm00001d038655_T003 | EnsemblPlantsGene:Zm00001d038655 | EntrezGene:100381713 | Gene3D:2.60.210.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like |
| ncoils:Coil | PANTHER:PTHR45001 | PFAM:PF00917 | PFscan:PS50144 | ProteinID:AQK87117.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000845416E | UniProt:A0A1D6M7T3 | MapMan:22.5.1.6 | : |
Description
TRAF-like superfamily protein
Coordinates
chr6:+:161921883..161936270
Molecular Weight (calculated)
143563.0 Da
IEP (calculated)
8.351
GRAVY (calculated)
-0.659
Length
1300 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGSVVTDDS AASTTGMRDD ENSLSGESFS EWRSCDRADS DTPSTSPPFW DSDGDDDDPG PKPSELFGHH TWRIENFSKE KKREMKSEPF EAGGYKWYIL
0101: VYPQGCDVSN HLSLFLCVAN HDKLLPGWSH FAQFTIAVAN IDPKKMKYSD TLHRFWKKEH DWGWKKFMEL SKIQDGFLVD DVLEIIAQVQ VIREKVDRPF
0201: RCLDRPYRRE LIRIYMTNVE QIYRRFVEER RSKLSKLIED KMKWSSFRAF WSAIDPNTRH HMSREKTETI LKILVKQFFV EKEVTSTLVM DSLYTSLKAL
0301: EYRMKSKKCK TKLADLEELP APMVHVDMDM FVLADDVIAL LERAALEPLP CQPVAPKDDK TSQSRMKVGI IQFDMLYLGF ISKFCDGSSG EVYKVSMERE
0401: ERRLTELAQK ILETFVLSHI FSGIEVAYQE AVALKRQEEL IREEEEEAGL LEHQMKGKRG GGANEKDKRA KKKQTKQKKN NRKAKDKERD VKCEVKILER
0501: LHDETVIDNS DGLPAKVEVI AKVDALEEGS SDGSDMPNRG KNQCNKGLSI SLAKEGDGLP STSSVTGGSG RNSSGCCTAP KLDQDTVLLT LRDKLRKLGQ
0601: RLQEKNIEGQ KLLKAHFEAR DTKVKVEESS DSSNSLDRPP DVPESSMHSS EDTVDLKVNG TPNKDASVVN PVLEESVSGI PVTAKNESLP SARTKEGPVS
0701: NKDNASSLKM KTMASCLKLH PADVDKDAPF PSKSPRINRA APVPSKLPSA DKATPVLPKS SLSVNKAALV RPKSPAVDKA TPVCPESPAV DKVTPVRPRS
0801: PAVDKATPVR SQSPAVDKAT HVCPQSPSVD KATPSIDKAT PVRPKSPAID KVTPIPPKSP PVDKASPAPP KSLSGAKDVP VPSRSLQIDR FIPAPPRLSQ
0901: VDKAALPSSE QPHISPATNS EAQGATTSRK VTASSVLEVA AASRPSSAPV LPTPRSTAPV ASHIQTSTLL SRSMSEAAGR RSVNDPSFSA PSYTPQTYRN
1001: AIIGKTGLAT TSANLAYQSY SLGQDTAPSQ PLSAYASSTA VMMPPAGRSD QSSARHGFKS GSGKLEAHDS WQQWKGDNNV DMHLWRDHTT YQQMTRGQAY
1101: DQSRRDDTYQ QTCSRGTEKF SRHAGLQARQ FQTETPASHV WHQQQGQVAE EFPHLDIIND LLEEDQINGS IPESFHQDYN VFGLPFSPRG NVSDMGMASV
1201: RSPARFNSTK YEYDGGFSGA YDINAVNGLR ERQFPSLDSY SNGLSDVSAS KPWLNGSPSP SVMSLGVNTN GYHPQVADYP SLGNGVNGVS LWRRHANGRW
0101: VYPQGCDVSN HLSLFLCVAN HDKLLPGWSH FAQFTIAVAN IDPKKMKYSD TLHRFWKKEH DWGWKKFMEL SKIQDGFLVD DVLEIIAQVQ VIREKVDRPF
0201: RCLDRPYRRE LIRIYMTNVE QIYRRFVEER RSKLSKLIED KMKWSSFRAF WSAIDPNTRH HMSREKTETI LKILVKQFFV EKEVTSTLVM DSLYTSLKAL
0301: EYRMKSKKCK TKLADLEELP APMVHVDMDM FVLADDVIAL LERAALEPLP CQPVAPKDDK TSQSRMKVGI IQFDMLYLGF ISKFCDGSSG EVYKVSMERE
0401: ERRLTELAQK ILETFVLSHI FSGIEVAYQE AVALKRQEEL IREEEEEAGL LEHQMKGKRG GGANEKDKRA KKKQTKQKKN NRKAKDKERD VKCEVKILER
0501: LHDETVIDNS DGLPAKVEVI AKVDALEEGS SDGSDMPNRG KNQCNKGLSI SLAKEGDGLP STSSVTGGSG RNSSGCCTAP KLDQDTVLLT LRDKLRKLGQ
0601: RLQEKNIEGQ KLLKAHFEAR DTKVKVEESS DSSNSLDRPP DVPESSMHSS EDTVDLKVNG TPNKDASVVN PVLEESVSGI PVTAKNESLP SARTKEGPVS
0701: NKDNASSLKM KTMASCLKLH PADVDKDAPF PSKSPRINRA APVPSKLPSA DKATPVLPKS SLSVNKAALV RPKSPAVDKA TPVCPESPAV DKVTPVRPRS
0801: PAVDKATPVR SQSPAVDKAT HVCPQSPSVD KATPSIDKAT PVRPKSPAID KVTPIPPKSP PVDKASPAPP KSLSGAKDVP VPSRSLQIDR FIPAPPRLSQ
0901: VDKAALPSSE QPHISPATNS EAQGATTSRK VTASSVLEVA AASRPSSAPV LPTPRSTAPV ASHIQTSTLL SRSMSEAAGR RSVNDPSFSA PSYTPQTYRN
1001: AIIGKTGLAT TSANLAYQSY SLGQDTAPSQ PLSAYASSTA VMMPPAGRSD QSSARHGFKS GSGKLEAHDS WQQWKGDNNV DMHLWRDHTT YQQMTRGQAY
1101: DQSRRDDTYQ QTCSRGTEKF SRHAGLQARQ FQTETPASHV WHQQQGQVAE EFPHLDIIND LLEEDQINGS IPESFHQDYN VFGLPFSPRG NVSDMGMASV
1201: RSPARFNSTK YEYDGGFSGA YDINAVNGLR ERQFPSLDSY SNGLSDVSAS KPWLNGSPSP SVMSLGVNTN GYHPQVADYP SLGNGVNGVS LWRRHANGRW
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.