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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0923700-04

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G43560.1 Os01t0923700-04 AT1G27320.1 18642946
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400042094 Potato cytosol 32.68 61.92
AT5G52330.3 Thale cress cytosol 31.13 60.45
Solyc06g053740.2.1 Tomato cytosol 29.83 55.29
CDX73257 Canola cytosol 26.98 51.23
Bra023279.1-P Field mustard cytosol 22.44 49.57
CDX93823 Canola cytosol 24.25 48.32
TraesCS1B01G339200.1 Wheat nucleus 79.51 44.23
TraesCS1D01G327700.1 Wheat nucleus 79.25 44.02
TraesCS1A01G325900.1 Wheat nucleus 79.25 44.02
Bra010174.1-P Field mustard cytosol 12.32 43.18
CDY26906 Canola cytosol 12.32 43.18
KXG22306 Sorghum nucleus 71.85 43.01
AT4G16045.1 Thale cress cytosol 20.88 42.15
HORVU1Hr1G078170.6 Barley cytosol 78.6 42.14
Zm00001d038655_P003 Maize nucleus 70.56 41.85
CDY01258 Canola cytosol 10.77 40.49
CDY01264 Canola cytosol 10.64 40.0
Os01t0775300-01 Rice cytosol, mitochondrion, nucleus 66.41 39.29
Zm00001d010716_P002 Maize nucleus 64.2 37.61
CDX86642 Canola nucleus 47.08 34.74
CDY10066 Canola nucleus 45.01 34.22
CDY32539 Canola nucleus 44.62 34.19
GSMUA_Achr2P12590_001 Banana nucleus 47.34 33.92
KRH31732 Soybean nucleus 49.81 33.71
VIT_05s0020g04980.t01 Wine grape nucleus 49.81 33.51
KRG92287 Soybean nucleus 49.16 33.25
KRH34524 Soybean nucleus 49.16 33.22
CDY18218 Canola nucleus 45.53 33.18
Bra032518.1-P Field mustard nucleus 42.41 32.9
CDX89828 Canola nucleus 45.27 32.89
Bra015302.1-P Field mustard nucleus 45.01 32.74
AT5G43560.1 Thale cress nucleus 44.62 32.61
AT1G04300.3 Thale cress nucleus 45.66 32.53
KRG90366 Soybean endoplasmic reticulum, plasma membrane 49.68 31.19
Solyc09g089560.2.1 Tomato nucleus 44.62 31.16
Solyc03g005430.2.1 Tomato nucleus 45.78 30.72
Solyc06g053750.2.1 Tomato nucleus 44.1 29.88
CDY22344 Canola nucleus 34.24 28.48
Bra033684.1-P Field mustard nucleus 34.24 28.48
CDX94711 Canola nucleus 34.11 27.31
GSMUA_Achr5P03190_001 Banana nucleus 47.99 26.2
Os12t0489100-01 Rice cytosol, extracellular, plasma membrane 13.88 19.42
Os01t0771400-00 Rice plasma membrane 16.21 12.25
Os11t0573000-01 Rice cytosol, plasma membrane 4.54 12.07
Os03t0192800-01 Rice nucleus 3.37 8.36
Bra041162.1-P Field mustard cytosol, nucleus, plastid 1.82 7.04
PGSC0003DMT400042093 Potato nucleus 4.93 5.69
Os12t0597200-01 Rice cytosol, nucleus, plastid 0.0 0.0
Os12t0489200-01 Rice cytosol 0.0 0.0
Os07t0163800-01 Rice cytosol, plasma membrane 0.0 0.0
Os02t0613400-01 Rice extracellular 0.0 0.0
Os03t0192900-01 Rice cytosol, nucleus 0.0 0.0
Protein Annotations
EnsemblPlants:Os05t0508700-01EnsemblPlantsGene:Os05g0508700Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likencoils:CoilPANTHER:PTHR45001
PFAM:PF00917PFscan:PS50144ProteinID:BAF17911.1ProteinID:BAS94813.1SEG:segSMART:SM00061
SUPFAM:SSF49599UniParc:UPI0000E1256FUniProt:Q0DGW2MapMan:22.5.1.6::
Description
single domain MDC protein 4, single MATH domain containing protein 4TRAF-type domain containing protein. (Os05t0508700-01);Similar to Math domain containing protein (Fragment). (Os05t0508700-02);Hypothetical conserved gene. (Os05t0508700-03)
Coordinates
chr5:+:25176651..25185037
Molecular Weight (calculated)
86313.7 Da
IEP (calculated)
6.480
GRAVY (calculated)
-0.758
Length
771 amino acids
Sequence
(BLAST)
001: MACAAATDDS AASTAGMRDE DRSLSGESLS EWRSCEQVES ESPSTSPPFW DTDGDDDDPG PKPSDLFGRY TWRIENFSKE KKREMKSEPF EAGGYKWYIL
101: VYPQGCDVSN HLSLFLCVAN HDKLLPGWSH FAQFTIAVGN IDPKKVKYSD TLHKFWKKEH DWGWKKFMEL SKIQDGFLVD DVLEIIAQVQ VIREKVDKPF
201: RCLDRPYRRE LLRVYTTNIE SIYRRFVEER RNKLSKLIED KMRWSSFCAF WSAIDPSTRH RMSREKTDVI LKVLVKHFFV EKEVTSTLVM DSLYTGLKVL
301: EYQSKGKKGR TIADLDELPA PMIHVDMDMF VLASDVIDLL ERAALEPLPC QPVSPKDDKC SQSRMKDGAS GEVNKISMER EERRLTELGR KILETFVLSH
401: IFSGIEVAYQ EAVALKRQEE LIREEEEEAW LLGNEMKGKR GGGANEKDKR AKKKQAKQKK NNRKIKDKER DEKFEAKILE RLHDETAIDD SDGLSSKQAE
501: EVTTKVENLE EGASDRQGDL DSSEIAHRPD SGDKYPRQMN GLSDVTGNAQ KVKKASSMEA NSPVFLADSV AASGTHSRGN NLSDSKNRMT PNRGKNQRNK
601: GISIISFSEE GEGIPSSSTG GSARCSSSCG TSAKLDQDTV LLTLKDKLRK LGQRLHEKNM EGRKLLQAHF EAMEAKTSGS SPSSSPLDET PDVVKSPEQS
701: AEGTTDAKAN GTPNKDEPVT NCVAEESVSV MPGTKSTEAL SGMALAKTKV EPVSNKDHVP KPTLQANRAS A
Best Arabidopsis Sequence Match ( AT1G04300.1 )
(BLAST)
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.