Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0923700-04 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G43560.1 | Os01t0923700-04 | AT1G27320.1 | 18642946 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400042094 | Potato | cytosol | 32.68 | 61.92 |
AT5G52330.3 | Thale cress | cytosol | 31.13 | 60.45 |
Solyc06g053740.2.1 | Tomato | cytosol | 29.83 | 55.29 |
CDX73257 | Canola | cytosol | 26.98 | 51.23 |
Bra023279.1-P | Field mustard | cytosol | 22.44 | 49.57 |
CDX93823 | Canola | cytosol | 24.25 | 48.32 |
TraesCS1B01G339200.1 | Wheat | nucleus | 79.51 | 44.23 |
TraesCS1D01G327700.1 | Wheat | nucleus | 79.25 | 44.02 |
TraesCS1A01G325900.1 | Wheat | nucleus | 79.25 | 44.02 |
Bra010174.1-P | Field mustard | cytosol | 12.32 | 43.18 |
CDY26906 | Canola | cytosol | 12.32 | 43.18 |
KXG22306 | Sorghum | nucleus | 71.85 | 43.01 |
AT4G16045.1 | Thale cress | cytosol | 20.88 | 42.15 |
HORVU1Hr1G078170.6 | Barley | cytosol | 78.6 | 42.14 |
Zm00001d038655_P003 | Maize | nucleus | 70.56 | 41.85 |
CDY01258 | Canola | cytosol | 10.77 | 40.49 |
CDY01264 | Canola | cytosol | 10.64 | 40.0 |
Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 66.41 | 39.29 |
Zm00001d010716_P002 | Maize | nucleus | 64.2 | 37.61 |
CDX86642 | Canola | nucleus | 47.08 | 34.74 |
CDY10066 | Canola | nucleus | 45.01 | 34.22 |
CDY32539 | Canola | nucleus | 44.62 | 34.19 |
GSMUA_Achr2P12590_001 | Banana | nucleus | 47.34 | 33.92 |
KRH31732 | Soybean | nucleus | 49.81 | 33.71 |
VIT_05s0020g04980.t01 | Wine grape | nucleus | 49.81 | 33.51 |
KRG92287 | Soybean | nucleus | 49.16 | 33.25 |
KRH34524 | Soybean | nucleus | 49.16 | 33.22 |
CDY18218 | Canola | nucleus | 45.53 | 33.18 |
Bra032518.1-P | Field mustard | nucleus | 42.41 | 32.9 |
CDX89828 | Canola | nucleus | 45.27 | 32.89 |
Bra015302.1-P | Field mustard | nucleus | 45.01 | 32.74 |
AT5G43560.1 | Thale cress | nucleus | 44.62 | 32.61 |
AT1G04300.3 | Thale cress | nucleus | 45.66 | 32.53 |
KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 49.68 | 31.19 |
Solyc09g089560.2.1 | Tomato | nucleus | 44.62 | 31.16 |
Solyc03g005430.2.1 | Tomato | nucleus | 45.78 | 30.72 |
Solyc06g053750.2.1 | Tomato | nucleus | 44.1 | 29.88 |
CDY22344 | Canola | nucleus | 34.24 | 28.48 |
Bra033684.1-P | Field mustard | nucleus | 34.24 | 28.48 |
CDX94711 | Canola | nucleus | 34.11 | 27.31 |
GSMUA_Achr5P03190_001 | Banana | nucleus | 47.99 | 26.2 |
Os12t0489100-01 | Rice | cytosol, extracellular, plasma membrane | 13.88 | 19.42 |
Os01t0771400-00 | Rice | plasma membrane | 16.21 | 12.25 |
Os11t0573000-01 | Rice | cytosol, plasma membrane | 4.54 | 12.07 |
Os03t0192800-01 | Rice | nucleus | 3.37 | 8.36 |
Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.82 | 7.04 |
PGSC0003DMT400042093 | Potato | nucleus | 4.93 | 5.69 |
Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 0.0 | 0.0 |
Os12t0489200-01 | Rice | cytosol | 0.0 | 0.0 |
Os07t0163800-01 | Rice | cytosol, plasma membrane | 0.0 | 0.0 |
Os02t0613400-01 | Rice | extracellular | 0.0 | 0.0 |
Os03t0192900-01 | Rice | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:Os05t0508700-01 | EnsemblPlantsGene:Os05g0508700 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
PFAM:PF00917 | PFscan:PS50144 | ProteinID:BAF17911.1 | ProteinID:BAS94813.1 | SEG:seg | SMART:SM00061 |
SUPFAM:SSF49599 | UniParc:UPI0000E1256F | UniProt:Q0DGW2 | MapMan:22.5.1.6 | : | : |
Description
single domain MDC protein 4, single MATH domain containing protein 4TRAF-type domain containing protein. (Os05t0508700-01);Similar to Math domain containing protein (Fragment). (Os05t0508700-02);Hypothetical conserved gene. (Os05t0508700-03)
Coordinates
chr5:+:25176651..25185037
Molecular Weight (calculated)
86313.7 Da
IEP (calculated)
6.480
GRAVY (calculated)
-0.758
Length
771 amino acids
Sequence
(BLAST)
(BLAST)
001: MACAAATDDS AASTAGMRDE DRSLSGESLS EWRSCEQVES ESPSTSPPFW DTDGDDDDPG PKPSDLFGRY TWRIENFSKE KKREMKSEPF EAGGYKWYIL
101: VYPQGCDVSN HLSLFLCVAN HDKLLPGWSH FAQFTIAVGN IDPKKVKYSD TLHKFWKKEH DWGWKKFMEL SKIQDGFLVD DVLEIIAQVQ VIREKVDKPF
201: RCLDRPYRRE LLRVYTTNIE SIYRRFVEER RNKLSKLIED KMRWSSFCAF WSAIDPSTRH RMSREKTDVI LKVLVKHFFV EKEVTSTLVM DSLYTGLKVL
301: EYQSKGKKGR TIADLDELPA PMIHVDMDMF VLASDVIDLL ERAALEPLPC QPVSPKDDKC SQSRMKDGAS GEVNKISMER EERRLTELGR KILETFVLSH
401: IFSGIEVAYQ EAVALKRQEE LIREEEEEAW LLGNEMKGKR GGGANEKDKR AKKKQAKQKK NNRKIKDKER DEKFEAKILE RLHDETAIDD SDGLSSKQAE
501: EVTTKVENLE EGASDRQGDL DSSEIAHRPD SGDKYPRQMN GLSDVTGNAQ KVKKASSMEA NSPVFLADSV AASGTHSRGN NLSDSKNRMT PNRGKNQRNK
601: GISIISFSEE GEGIPSSSTG GSARCSSSCG TSAKLDQDTV LLTLKDKLRK LGQRLHEKNM EGRKLLQAHF EAMEAKTSGS SPSSSPLDET PDVVKSPEQS
701: AEGTTDAKAN GTPNKDEPVT NCVAEESVSV MPGTKSTEAL SGMALAKTKV EPVSNKDHVP KPTLQANRAS A
101: VYPQGCDVSN HLSLFLCVAN HDKLLPGWSH FAQFTIAVGN IDPKKVKYSD TLHKFWKKEH DWGWKKFMEL SKIQDGFLVD DVLEIIAQVQ VIREKVDKPF
201: RCLDRPYRRE LLRVYTTNIE SIYRRFVEER RNKLSKLIED KMRWSSFCAF WSAIDPSTRH RMSREKTDVI LKVLVKHFFV EKEVTSTLVM DSLYTGLKVL
301: EYQSKGKKGR TIADLDELPA PMIHVDMDMF VLASDVIDLL ERAALEPLPC QPVSPKDDKC SQSRMKDGAS GEVNKISMER EERRLTELGR KILETFVLSH
401: IFSGIEVAYQ EAVALKRQEE LIREEEEEAW LLGNEMKGKR GGGANEKDKR AKKKQAKQKK NNRKIKDKER DEKFEAKILE RLHDETAIDD SDGLSSKQAE
501: EVTTKVENLE EGASDRQGDL DSSEIAHRPD SGDKYPRQMN GLSDVTGNAQ KVKKASSMEA NSPVFLADSV AASGTHSRGN NLSDSKNRMT PNRGKNQRNK
601: GISIISFSEE GEGIPSSSTG GSARCSSSCG TSAKLDQDTV LLTLKDKLRK LGQRLHEKNM EGRKLLQAHF EAMEAKTSGS SPSSSPLDET PDVVKSPEQS
701: AEGTTDAKAN GTPNKDEPVT NCVAEESVSV MPGTKSTEAL SGMALAKTKV EPVSNKDHVP KPTLQANRAS A
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.