Factsheet for Os01t0771400-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

plasma membrane: 18260611

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0573000-01	Rice	cytosol, plasma membrane	24.9	87.59
KRH33457	Soybean	cytosol	11.57	80.82
HORVU3Hr1G075250.1	Barley	cytosol	26.96	74.73
Os12t0489100-01	Rice	cytosol, extracellular, plasma membrane	38.82	71.87
KRH17929	Soybean	cytosol	31.18	71.78
KRG89898	Soybean	cytosol	25.39	68.52
TraesCS3A01G295900.7	Wheat	cytosol	70.0	64.67
TraesCS3D01G307100.1	Wheat	cytosol	69.9	64.58
Zm00001d043312_P001	Maize	nucleus	70.69	64.55
KXG33467	Sorghum	nucleus	70.69	64.49
TraesCS3B01G341000.1	Wheat	cytosol	69.61	64.31
KRH73403	Soybean	nucleus	66.76	60.91
KRH14719	Soybean	nucleus	66.47	60.64
HORVU3Hr1G075220.5	Barley	endoplasmic reticulum	43.73	58.0
KRG89895	Soybean	nucleus	41.08	55.94
KRH17931	Soybean	mitochondrion, nucleus	34.51	51.99
Os07t0163800-01	Rice	cytosol, plasma membrane	8.92	30.95
Os03t0192800-01	Rice	nucleus	7.06	23.15
Os05t0508700-01	Rice	nucleus	12.25	16.21
Os01t0775300-01	Rice	cytosol, mitochondrion, nucleus	13.24	10.36
Os12t0597200-01	Rice	cytosol, nucleus, plastid	0.98	3.24
Os02t0613400-01	Rice	extracellular	0.78	2.71
Os12t0489200-01	Rice	cytosol	0.1	2.33
Os03t0192900-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	UniProt:A0A0P0V8R4
ProteinID:BAS74556.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008270	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0043565	InterPro:IPR002083
InterPro:IPR008974	InterPro:IPR028889	InterPro:MATH/TRAF_dom	EnsemblPlantsGene:Os01g0771400	EnsemblPlants:Os01t0771400-00	PFAM:PF00443
PFAM:PF00917	PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144
PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061
SUPFAM:SSF49599	SUPFAM:SSF54001	InterPro:TRAF-like	UniParc:UPI0003938A5F	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C
InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:	:

Description

single domain MDC protein 2, single MATH domain containing protein 2Similar to CM0545.290.nc protein. (Os01t0771400-00)

Coordinates

chr1:-:32553344..32569462

Molecular Weight (calculated)

119359.0 Da

IEP (calculated)

6.465

GRAVY (calculated)

-0.470

Length

1020 amino acids

Sequence
(BLAST)

0001: MVVRFEMVSI RVWVFFFTEM RWRFTKVWVL VACPVVCSSC SRTRMRRCWC QTRMLLLRDL SRWKVRFLYS GSTVENEQVP ETSTSRFTWT IEDFSNHRKL
0101: YSDVFVVGGH KWRVLVFPTG NSVQSLSMYL DIADANEQPH GWSKYAQFSL AVINQLDSKY SLRKEAAHHF STRESDWGFT SFMHLGDLYD PTKGYIVNDK
0201: CIIEAEVAVR KIVDFWNYDS KKETGYVGLK NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDTPCGSI PLALQSLFCK LQHSDNSVST KELTKSFGWD
0301: TVDSFLQHDV QELNRVLCEK LENKMKGTTV EGTIQQLFEG HHMNYIECIN VDYKSTRKES FYDLALDVKG CSDVYASFDK YVEVERLEGD NKYQSEKHGL
0401: QDAKKGMLFI DFPPVLQVQL KRFEYDFVRD TMVKINDRYE FPLQLDLDKD DGKYLSPEAD RRVRNLYTLH SVLVHSGGGH GGHYYAFIRP ALSDIWYKFD
0501: DERVTKEDMK RALEEQYGGE EELPHTNPGL NTTPLRFTKH SNAYMLVYIR ESDREKIICN LDENDIPEHL KIRLRKENEE REYKKKEKAE AHMFTALKVA
0601: RDSDFAEQIG KHIYFDLVDY DNIQSLRAPK HLTINQAKVD LSKEFGIPVQ SQRFWLWAKR QNHTFRPVRP LTLQEEASSI GHLTDPSNKS LNSELKLFLE
0701: VALGQENHPI SVPPKTKDDI LIFFKLYDPE KEELRYVGKL LVKASGKPAD IVQKLQEMAG FQSDEDIELY EEVMFEPSVM CEPININDSF LSSQLEDGDI
0801: ICYQKRCSPE KLDHYRCADV PSFFEYIQNR QVVHFRLLEN PKDDDFTLEL SKRFTYDDVV EKVANQLGLD DPSKLRLTQH LPYSQMPKSH YIKYRGLDHL
0901: SDMLRNGNQM SDILYYEILD IPLPVLQDLI TLRVAFYHAT NNEVSSHFIR LPKGSTMSDL IEDMKSKVNQ LLVFFQVLCV HGNLMIFFQV ELSYSDAEFR
1001: LFEVYKNKIR KVFQQFFCNS

Best Arabidopsis Sequence Match ( AT3G11910.1 )
(BLAST)

0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.