CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89895	Soybean	nucleus	97.78	88.38
KRG90154	Soybean	cytosol	20.09	75.14
KRH73403	Soybean	nucleus	93.06	56.35
HORVU3Hr1G075220.5	Barley	endoplasmic reticulum	63.96	56.31
KRH14719	Soybean	nucleus	92.91	56.26
KRG90152	Soybean	cytosol	55.83	48.21
KRH33402	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.37	45.31
TraesCS3D01G307100.1	Wheat	cytosol	63.22	38.77
TraesCS3A01G295900.7	Wheat	cytosol	63.22	38.77
TraesCS3B01G341000.1	Wheat	cytosol	63.07	38.68
KXG33467	Sorghum	nucleus	62.78	38.01
Zm00001d043312_P001	Maize	nucleus	62.48	37.87
Os01t0771400-00	Rice	plasma membrane	51.99	34.51
KRG98483	Soybean	cytosol	5.61	15.32
KRH71762	Soybean	cytosol	4.14	14.74
KRH46376	Soybean	cytosol	5.91	11.87
KRH61744	Soybean	cytosol	9.9	10.45
KRG96334	Soybean	cytosol	5.32	10.34
KRH32941	Soybean	cytosol	4.14	9.76
KRH32747	Soybean	cytosol	5.17	9.56
KRH71764	Soybean	cytosol	5.02	9.44
KRH68070	Soybean	cytosol	5.17	9.28
KRH71763	Soybean	cytosol	3.55	9.27
KRG96333	Soybean	cytosol	5.47	9.02
KRG96335	Soybean	cytosol	5.02	8.97
KRH16103	Soybean	nucleus	13.88	8.7
KRH61900	Soybean	cytosol, mitochondrion, nucleus	14.03	8.67
KRH52561	Soybean	cytosol	13.88	8.42
KRH31732	Soybean	nucleus	14.03	8.34
KRH34524	Soybean	nucleus	14.03	8.33
KRH04994	Soybean	nucleus	13.29	8.33
KRG92287	Soybean	nucleus	13.74	8.16
Os11t0573000-01	Rice	cytosol, plasma membrane	3.4	7.93
KRG90366	Soybean	endoplasmic reticulum, plasma membrane	13.74	7.57
KRH52412	Soybean	nucleus	17.87	7.21
KRH61745	Soybean	nucleus	7.68	5.31
KRG90150	Soybean	cytosol	0.74	2.36
KRG89898	Soybean	cytosol	0.44	0.79
KRH33457	Soybean	cytosol	0.15	0.68
KRH17929	Soybean	cytosol	0.44	0.68
HORVU3Hr1G075250.1	Barley	cytosol	0.0	0.0
KRG98484	Soybean	cytosol	0.0	0.0

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:3.10.20.90	Gene3D:3.90.70.10	UniProt:A0A0R0GSM7	EMBL:ACUP02007988
ncoils:Coil	EnsemblPlantsGene:GLYMA_13G027800	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	EnsemblPlants:KRH17931	ProteinID:KRH17931	ProteinID:KRH17931.1	PFAM:PF00443	PFAM:PF12436
PFAM:PF14533	PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF614	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	UniParc:UPI0006ED6A18	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:6817696..6864386

Molecular Weight (calculated)

79995.8 Da

IEP (calculated)

5.627

GRAVY (calculated)

-0.733

Length

677 amino acids

Sequence
(BLAST)

001: MNVLVHSGGV HGGHYYAFIR PTLSEQWYKF DDERVTKEDN KRALEEQYGG EEELPQTNPG FNNTPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAAH
101: LRERLKKEQE EKEHKKKEKA EAHLYTIIKV ARDEELKEQI GKDIYFDLVD HDKVRSFRVQ KQTSFNLFKE EVAKEYGIPV QFQRYWLWAK RQNHTYRPNR
201: PLSHIEEAQS VGQLREVSNK VHNAELKLFL EVEPGMDSCP IAPPDKTKDD ILLFFKLYDP EKEELRYVGR LFVKCTGKPL EILARLNEMA GYDPEEDIAL
301: YEEIKFEPNV MCEPIDKKVT FRTSQLEDGD IICFQKASSM DIEENVRYPD VPSYLEYVHN RQVVHFRSLE RPKEDDFFLE MSRLFTYDDV VERVAQQLGL
401: DDPSKIRLTP HNCYSQQPKP QPIKYRGVEH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL KTLKVAFHHA TKDEVVIHTI RLPKQSIVGD VLDDLKTKVE
501: LSDPEAELRL LEVFYHKIYK VFPPNEKIEN INDQYWTLRA EEIPEEEKNL GPHDRLIHVY HFNKDAAQNQ MQIQNFGEPF FLVIHEGETL DEIKVRIQKK
601: LQVPDDEFCK WKFAFLSLGR PEYLQDSDVV SSRFQRRDVY GAWEQYLGLE HTDNAPKRSY AVNQNRHTFE KPVKIYN

Best Arabidopsis Sequence Match ( AT3G11910.1 )
(BLAST)

0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.