Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 6
- vacuole 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | KRH42680 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | KRH58780 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31732 | Soybean | nucleus | 88.03 | 94.91 |
| KRH34524 | Soybean | nucleus | 73.94 | 79.58 |
| KRG92287 | Soybean | nucleus | 73.78 | 79.47 |
| PGSC0003DMT400042094 | Potato | cytosol | 25.33 | 76.41 |
| Solyc06g053740.2.1 | Tomato | cytosol | 23.62 | 69.71 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 64.98 | 69.63 |
| OQU79503 | Sorghum | nucleus | 24.67 | 66.89 |
| AT5G52330.3 | Thale cress | cytosol | 21.34 | 66.0 |
| CDY10066 | Canola | nucleus | 45.52 | 55.13 |
| CDX86642 | Canola | nucleus | 46.74 | 54.93 |
| CDY32539 | Canola | nucleus | 44.63 | 54.47 |
| AT1G04300.3 | Thale cress | nucleus | 47.96 | 54.44 |
| CDX89828 | Canola | nucleus | 46.99 | 54.38 |
| Bra015302.1-P | Field mustard | nucleus | 46.82 | 54.25 |
| AT5G43560.1 | Thale cress | nucleus | 46.34 | 53.93 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 46.91 | 53.53 |
| Bra032518.1-P | Field mustard | nucleus | 43.32 | 53.52 |
| CDY18218 | Canola | nucleus | 46.01 | 53.4 |
| Os05t0508700-01 | Rice | nucleus | 31.19 | 49.68 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 43.32 | 47.42 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 43.32 | 47.37 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 43.24 | 47.28 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 43.24 | 47.28 |
| EES16279 | Sorghum | nucleus | 42.67 | 46.7 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 47.88 | 41.64 |
| PGSC0003DMT400042093 | Potato | nucleus | 21.66 | 39.82 |
| EES01550 | Sorghum | nucleus | 37.78 | 38.35 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 39.17 | 36.91 |
| KXG22306 | Sorghum | nucleus | 38.6 | 36.8 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 37.78 | 36.08 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 38.11 | 35.48 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 37.95 | 35.44 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 39.98 | 35.43 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 39.9 | 35.3 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 39.74 | 35.16 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 39.01 | 35.01 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 39.5 | 33.73 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 7.41 | 29.45 |
| KRG98484 | Soybean | cytosol | 2.61 | 28.83 |
| KRG90150 | Soybean | cytosol | 4.07 | 23.58 |
| KRG89898 | Soybean | cytosol | 6.92 | 22.49 |
| KRH17929 | Soybean | cytosol | 8.06 | 22.35 |
| KRG96334 | Soybean | cytosol | 6.11 | 21.55 |
| KRH68070 | Soybean | cytosol | 6.43 | 20.95 |
| KRH46376 | Soybean | cytosol | 5.7 | 20.77 |
| KRH71763 | Soybean | cytosol | 4.32 | 20.46 |
| KRG96335 | Soybean | cytosol | 6.27 | 20.32 |
| KRH32941 | Soybean | cytosol | 4.56 | 19.51 |
| KRH71764 | Soybean | cytosol | 5.7 | 19.44 |
| KRH32747 | Soybean | cytosol | 5.78 | 19.4 |
| KRG96333 | Soybean | cytosol | 6.27 | 18.78 |
| KRH14719 | Soybean | nucleus | 15.47 | 16.99 |
| KRH73403 | Soybean | nucleus | 15.47 | 16.99 |
| KRG98483 | Soybean | cytosol | 3.26 | 16.13 |
| KRH33402 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.41 | 15.51 |
| KRG89895 | Soybean | nucleus | 8.55 | 14.02 |
| KRH17931 | Soybean | mitochondrion, nucleus | 7.57 | 13.74 |
| KRH71762 | Soybean | cytosol | 2.04 | 13.16 |
| KRG90152 | Soybean | cytosol | 7.98 | 12.5 |
| KRG90154 | Soybean | cytosol | 1.71 | 11.6 |
| KRH61745 | Soybean | nucleus | 8.06 | 10.11 |
| KRH33457 | Soybean | cytosol | 1.14 | 9.59 |
| KRH52412 | Soybean | nucleus | 11.4 | 8.34 |
| KRH16103 | Soybean | nucleus | 7.33 | 8.33 |
| KRH61900 | Soybean | cytosol, mitochondrion, nucleus | 7.25 | 8.12 |
| KRH52561 | Soybean | cytosol | 7.33 | 8.06 |
| KRH04994 | Soybean | nucleus | 7.0 | 7.96 |
| KRH61744 | Soybean | cytosol | 2.93 | 5.62 |
Protein Annotations
| EntrezGene:100784393 | Gene3D:2.60.210.10 | MapMan:22.5.1.6 | UniProt:A0A0R0EKQ0 | EMBL:ACUP02012605 | EnsemblPlantsGene:GLYMA_20G086700 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | EnsemblPlants:KRG90366 |
| ProteinID:KRG90366 | ProteinID:KRG90366.1 | InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR45001 |
| SMART:SM00061 | SUPFAM:SSF49599 | SignalP:SignalP-TM | TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI0006ED908B |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr20:+:32239177..32257222
Molecular Weight (calculated)
137353.0 Da
IEP (calculated)
6.840
GRAVY (calculated)
-0.632
Length
1228 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSLVSALLLL LTSYSLSFRF LSLKSQSCCC YLLLRFQFPY LPLIFFLLLR CFYYPSSASF PSISINVLHG NRCPRSWCYK RSVSEIVLDQ GMAGISGEES
0101: GVGKSAEGTF SGQRCQSGEA LAEWRSSEQV ENGTPSTSPP YWDIDDDDDG PKPSELYGRY TWKIENFSQI TKRELRSSAF EVGSYKWYIL IYPQGCDVCN
0201: HLSLFLCVAN HDKLLPGWSH FAQFTIAVVN KDPKKSKYSD TLHRFWKKEH DWGWKKFMEL SKVYDGFVDA SDNLIIKAQV QVIREKADRP FRCLDCQYRR
0301: ELVRVYLTNV EQICRRFVEE RRSKLGKLIE DKARWSSFCT FWREIDQTSR RRMSREKTDV ILKVVVKHFF IEKEVTSTLV MDSLYSGLKA LEGQNKCKKG
0401: RVKLLDAEEM PAPIVGAEKD MFVLVDDVLL LLERAAKEPL PPKDEKGPQN RTKDGNSGED FNKDSIERDE RRLTELGRRT LEIFVLAHIF SNKIEVSYQE
0501: AVALKRQEEL IREEEAAWLA ESEQKAKRGN EREKKSKKKQ AKQKRNNRKG KDKGREERPI VAVYDKQQDN TADEKKDSNM EEVQALDEKL YALEIVSDVS
0601: DSVDGVGEVL QPDSEDRDVS PVNWDTDASE VHPPTEASSN GIVSLSSVQN GMAEKRSSLV MDDSSSTCST DSLPSMVMND HYKGNSFSNY KVQKSPNRGK
0701: NQVKASCNVD SCTTEMDSQP SGSSADAVDV NESGSSKLGG SEPEGAVLCL QDRLKWLDQP VIRKEEDISS LQKKQTIKDQ VNIERTVDNE SLSKEKKSAV
0801: PSSSSSPPRN LPVQMKSENQ TRVTGDPVHV RKTSFGVSQS TDKEASSSST SVSQVTIGPK TEIQKASPPR LTERSMAQVA MLSRPSSAPL VPGGPRPTAA
0901: VVSMVQTAPL LARSVSATGR LGPDPSPATH SYVPQSYRNA IMGNPVVSTA ASLPHSSSSS GVNPSPGYSH PPMVSSPLFI SRSSDKMDSN TSQSGVPFGM
1001: ISRDVLQNGP NWIDSSQREA SRSMHYEPPS RLNDVQNLDL FRPIDCRSLG NIPSEFPVYT SRRPNQGALV DEFPHLDIIN DLLDEPRDHG IGKASRASSV
1101: FHSLNDGPQL LNRQFTFPRD LGTDDDLGSS TSSCRLERSR SYHDAGFQQG YSTSGWHYDS LQDYVPQAST LSYGNGKVDG MIPNQWQVAD LSYLGMRNTE
1201: NSYSYYQDYS NMACGVNGYT VFRPSNGP
0101: GVGKSAEGTF SGQRCQSGEA LAEWRSSEQV ENGTPSTSPP YWDIDDDDDG PKPSELYGRY TWKIENFSQI TKRELRSSAF EVGSYKWYIL IYPQGCDVCN
0201: HLSLFLCVAN HDKLLPGWSH FAQFTIAVVN KDPKKSKYSD TLHRFWKKEH DWGWKKFMEL SKVYDGFVDA SDNLIIKAQV QVIREKADRP FRCLDCQYRR
0301: ELVRVYLTNV EQICRRFVEE RRSKLGKLIE DKARWSSFCT FWREIDQTSR RRMSREKTDV ILKVVVKHFF IEKEVTSTLV MDSLYSGLKA LEGQNKCKKG
0401: RVKLLDAEEM PAPIVGAEKD MFVLVDDVLL LLERAAKEPL PPKDEKGPQN RTKDGNSGED FNKDSIERDE RRLTELGRRT LEIFVLAHIF SNKIEVSYQE
0501: AVALKRQEEL IREEEAAWLA ESEQKAKRGN EREKKSKKKQ AKQKRNNRKG KDKGREERPI VAVYDKQQDN TADEKKDSNM EEVQALDEKL YALEIVSDVS
0601: DSVDGVGEVL QPDSEDRDVS PVNWDTDASE VHPPTEASSN GIVSLSSVQN GMAEKRSSLV MDDSSSTCST DSLPSMVMND HYKGNSFSNY KVQKSPNRGK
0701: NQVKASCNVD SCTTEMDSQP SGSSADAVDV NESGSSKLGG SEPEGAVLCL QDRLKWLDQP VIRKEEDISS LQKKQTIKDQ VNIERTVDNE SLSKEKKSAV
0801: PSSSSSPPRN LPVQMKSENQ TRVTGDPVHV RKTSFGVSQS TDKEASSSST SVSQVTIGPK TEIQKASPPR LTERSMAQVA MLSRPSSAPL VPGGPRPTAA
0901: VVSMVQTAPL LARSVSATGR LGPDPSPATH SYVPQSYRNA IMGNPVVSTA ASLPHSSSSS GVNPSPGYSH PPMVSSPLFI SRSSDKMDSN TSQSGVPFGM
1001: ISRDVLQNGP NWIDSSQREA SRSMHYEPPS RLNDVQNLDL FRPIDCRSLG NIPSEFPVYT SRRPNQGALV DEFPHLDIIN DLLDEPRDHG IGKASRASSV
1101: FHSLNDGPQL LNRQFTFPRD LGTDDDLGSS TSSCRLERSR SYHDAGFQQG YSTSGWHYDS LQDYVPQAST LSYGNGKVDG MIPNQWQVAD LSYLGMRNTE
1201: NSYSYYQDYS NMACGVNGYT VFRPSNGP
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.