Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03780.t01 | |
| VIT_04s0008g03460.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | VIT_01s0010g03780.t01 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | VIT_04s0008g03460.t01 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042094 | Potato | cytosol | 28.1 | 79.12 |
| KRH31732 | Soybean | nucleus | 70.24 | 70.68 |
| KRH34524 | Soybean | nucleus | 70.07 | 70.38 |
| KRG92287 | Soybean | nucleus | 69.02 | 69.39 |
| AT5G52330.3 | Thale cress | cytosol | 23.47 | 67.76 |
| OQU79503 | Sorghum | nucleus | 26.7 | 67.55 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 69.63 | 64.98 |
| Solyc03g005430.2.1 | Tomato | nucleus | 62.39 | 62.23 |
| Solyc09g089560.2.1 | Tomato | nucleus | 59.86 | 62.14 |
| Solyc06g053750.2.1 | Tomato | nucleus | 60.82 | 61.25 |
| CDX86642 | Canola | nucleus | 51.48 | 56.46 |
| CDY10066 | Canola | nucleus | 49.65 | 56.11 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 52.53 | 55.95 |
| AT1G04300.3 | Thale cress | nucleus | 52.79 | 55.91 |
| Bra015302.1-P | Field mustard | nucleus | 51.57 | 55.75 |
| CDX89828 | Canola | nucleus | 51.57 | 55.7 |
| CDY32539 | Canola | nucleus | 48.78 | 55.57 |
| CDY18218 | Canola | nucleus | 50.79 | 55.01 |
| AT5G43560.1 | Thale cress | nucleus | 50.52 | 54.88 |
| Bra032518.1-P | Field mustard | nucleus | 47.47 | 54.73 |
| Os05t0508700-01 | Rice | nucleus | 33.51 | 49.81 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 47.64 | 48.62 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 47.56 | 48.57 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 47.47 | 48.44 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 47.38 | 48.35 |
| EES16279 | Sorghum | nucleus | 46.77 | 47.77 |
| PGSC0003DMT400042093 | Potato | nucleus | 26.7 | 45.81 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 53.05 | 43.06 |
| EES01550 | Sorghum | nucleus | 41.19 | 39.01 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 41.8 | 36.76 |
| KXG22306 | Sorghum | nucleus | 41.27 | 36.72 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 40.92 | 36.47 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 41.01 | 35.63 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 40.58 | 35.36 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 42.76 | 35.35 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 42.76 | 35.3 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 42.58 | 35.16 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 41.45 | 34.72 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 9.25 | 34.3 |
| VIT_12s0121g00410.t01 | Wine grape | cytosol | 2.62 | 34.09 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 42.32 | 33.73 |
| VIT_08s0032g00600.t01 | Wine grape | cytosol | 16.49 | 16.94 |
| VIT_06s0009g00960.t01 | Wine grape | cytosol | 16.4 | 16.85 |
| VIT_13s0073g00610.t01 | Wine grape | cytosol | 15.79 | 16.23 |
| VIT_04s0008g03170.t01 | Wine grape | mitochondrion | 7.94 | 8.32 |
| VIT_04s0008g05690.t01 | Wine grape | nucleus | 11.95 | 8.14 |
| VIT_11s0016g05880.t01 | Wine grape | mitochondrion | 10.47 | 7.91 |
Protein Annotations
| EntrezGene:100247786 | wikigene:100247786 | Gene3D:2.60.210.10 | MapMan:22.5.1.6 | ProteinID:CCB50513 | ProteinID:CCB50513.1 |
| ncoils:Coil | UniProt:F6HE19 | EMBL:FN595749 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR002083 | InterPro:IPR008974 | EntrezGene:LOC100247786 |
| wikigene:LOC100247786 | InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR45001 | SMART:SM00061 |
| SUPFAM:SSF49599 | TIGR:TC53298 | TIGR:TC71058 | InterPro:TRAF-like | UniParc:UPI000198340C | ArrayExpress:VIT_05s0020g04980 |
| EnsemblPlantsGene:VIT_05s0020g04980 | EnsemblPlants:VIT_05s0020g04980.t01 | unigene:Vvi.7409 | RefSeq:XP_002284428 | RefSeq:XP_002284428.1 | RefSeq:XP_019075561.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:6897968..6915133
Molecular Weight (calculated)
127046.0 Da
IEP (calculated)
6.864
GRAVY (calculated)
-0.733
Length
1146 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGIASEESG IGRSTDIISS GQRCQSGEAL AEWRSSEQVE NGTPSTSPPY WDSDDPDDTG AKPSELYGKY TWKIEKFSQI NKRELRSNAF EVGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN HDKLLPGWSH FAQFTIAVVN KDPKKSKYSD TLHRFWKKEH DWGWKKFMEL SKVLDGFIDA DTLIIKAQVQ VIRERADRPF
0201: RCLDCQYRRE LVRVYLTNVE QICRRFVEER RGKLGKLIED KARWSSFCAF WLGIDQNARR RMSREKTDSI LKVVVKHFFI EKEVTSTLVM DSLYSGLKAL
0301: EGQTNKSKKG RAKLLDAEEM PAPIVRVEKD MFVLVDDVLL LLERAALEPL PPKDEKGPQN RTKDGGPGED FNKDSIERDE RRLTELGRRT VEIFVLAHIF
0401: SNKIEVSYQE AVALKRQEEL IREEEAAWLA ESEQKAKRGA IEKEKKSKKK QAKQKRNNRK GKDKGKDERP GVTLQEKQQQ GSPNDGRNDF MREQVQTVLE
0501: KPDTLEDVSD VSDSVDCAAE MPQPDSEDRD ASHINWDTDT SEVHPPTEAS SSAISGLSSV QNGITDRKSP GVMDDSSSTC STDSVPSVVM NGPYKGNSFP
0601: NYKNQKSPSR GKNQRSKVAY DGTSWANELD AHPSGPATDA GDLNDASGSC KAAESESEAG SLSLHDQIKW LEQHVVKKEE EVVLLQKKLS IKDQVDTERQ
0701: SKEKTTAAPS PPRSPPRSLP STAQLKLESK STPIAEPVSV RKTSSNSPQA AYKAAPLVTS TQTMMVSKPE TQKTATPKPT EQPTVHQVPM VSRPSTAPLI
0801: PGPRPTAPVV SMVQTTPLLA RSVSAAGRLG PDPSPATHSY VPQSYRNAII GNSVSSSSSG FSHPHSSSTG NSSPAYSQLP TLVSSPMFLP QNSDRLDVNS
0901: VKSGFSFGMG TQDILQNGAQ WTERSQRDAS RSTNCGPSML NDIQNIDFYN PVHSGSREHF STEFPAGTSG YQTHGVMIDE FPFPHLDIIN DLLNDEQVGK
1001: AARASTSSQS LSNGPHLLSR QRSFPGDMGI AGDLGSSTSA CRFERTRSYH VGANHDEVFQ RNYGSSGSHF DHPLRDFIPQ ANPPHYANGP IDGLIPNQWQ
1101: VAGSDIPMFN ARNAVESDGY PYYIPDYQNP ACGIDGYTMF RPSNGH
0101: IYPQGCDVCN HLSLFLCVAN HDKLLPGWSH FAQFTIAVVN KDPKKSKYSD TLHRFWKKEH DWGWKKFMEL SKVLDGFIDA DTLIIKAQVQ VIRERADRPF
0201: RCLDCQYRRE LVRVYLTNVE QICRRFVEER RGKLGKLIED KARWSSFCAF WLGIDQNARR RMSREKTDSI LKVVVKHFFI EKEVTSTLVM DSLYSGLKAL
0301: EGQTNKSKKG RAKLLDAEEM PAPIVRVEKD MFVLVDDVLL LLERAALEPL PPKDEKGPQN RTKDGGPGED FNKDSIERDE RRLTELGRRT VEIFVLAHIF
0401: SNKIEVSYQE AVALKRQEEL IREEEAAWLA ESEQKAKRGA IEKEKKSKKK QAKQKRNNRK GKDKGKDERP GVTLQEKQQQ GSPNDGRNDF MREQVQTVLE
0501: KPDTLEDVSD VSDSVDCAAE MPQPDSEDRD ASHINWDTDT SEVHPPTEAS SSAISGLSSV QNGITDRKSP GVMDDSSSTC STDSVPSVVM NGPYKGNSFP
0601: NYKNQKSPSR GKNQRSKVAY DGTSWANELD AHPSGPATDA GDLNDASGSC KAAESESEAG SLSLHDQIKW LEQHVVKKEE EVVLLQKKLS IKDQVDTERQ
0701: SKEKTTAAPS PPRSPPRSLP STAQLKLESK STPIAEPVSV RKTSSNSPQA AYKAAPLVTS TQTMMVSKPE TQKTATPKPT EQPTVHQVPM VSRPSTAPLI
0801: PGPRPTAPVV SMVQTTPLLA RSVSAAGRLG PDPSPATHSY VPQSYRNAII GNSVSSSSSG FSHPHSSSTG NSSPAYSQLP TLVSSPMFLP QNSDRLDVNS
0901: VKSGFSFGMG TQDILQNGAQ WTERSQRDAS RSTNCGPSML NDIQNIDFYN PVHSGSREHF STEFPAGTSG YQTHGVMIDE FPFPHLDIIN DLLNDEQVGK
1001: AARASTSSQS LSNGPHLLSR QRSFPGDMGI AGDLGSSTSA CRFERTRSYH VGANHDEVFQ RNYGSSGSHF DHPLRDFIPQ ANPPHYANGP IDGLIPNQWQ
1101: VAGSDIPMFN ARNAVESDGY PYYIPDYQNP ACGIDGYTMF RPSNGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.