Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g015610.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | Solyc05g015610.2.1 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053740.2.1 | Tomato | cytosol | 25.5 | 70.43 |
| Solyc09g089560.2.1 | Tomato | nucleus | 64.58 | 67.21 |
| OQU79503 | Sorghum | nucleus | 26.11 | 66.23 |
| Solyc06g053750.2.1 | Tomato | nucleus | 65.54 | 66.17 |
| AT5G52330.3 | Thale cress | cytosol | 21.85 | 63.22 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 62.23 | 62.39 |
| CDX89828 | Canola | nucleus | 47.0 | 50.9 |
| Bra015302.1-P | Field mustard | nucleus | 46.91 | 50.85 |
| CDX86642 | Canola | nucleus | 46.21 | 50.81 |
| CDY18218 | Canola | nucleus | 46.65 | 50.66 |
| AT5G43560.1 | Thale cress | nucleus | 46.48 | 50.62 |
| CDY32539 | Canola | nucleus | 44.3 | 50.6 |
| CDY10066 | Canola | nucleus | 44.39 | 50.3 |
| AT1G04300.3 | Thale cress | nucleus | 47.08 | 50.0 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 46.82 | 50.0 |
| Bra032518.1-P | Field mustard | nucleus | 42.91 | 49.6 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 45.17 | 46.26 |
| EES16279 | Sorghum | nucleus | 45.08 | 46.17 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 45.0 | 46.04 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 44.82 | 45.86 |
| Os05t0508700-01 | Rice | nucleus | 30.72 | 45.78 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 44.65 | 45.68 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 46.3 | 37.68 |
| EES01550 | Sorghum | nucleus | 37.25 | 35.37 |
| KXG22306 | Sorghum | nucleus | 38.99 | 34.78 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 37.86 | 33.38 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 36.99 | 33.05 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 39.43 | 32.64 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 39.16 | 32.47 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 39.16 | 32.42 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 37.08 | 32.3 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 36.81 | 32.17 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 37.25 | 31.29 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 39.08 | 31.22 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 7.66 | 28.48 |
| Solyc11g006320.1.1 | Tomato | cytosol | 14.97 | 15.4 |
| Solyc05g055090.2.1 | Tomato | cytosol | 14.88 | 15.28 |
| Solyc11g071700.1.1 | Tomato | cytosol, plastid | 14.45 | 14.94 |
| Solyc10g081610.1.1 | Tomato | cytosol, extracellular, nucleus | 14.45 | 14.79 |
| Solyc06g073820.1.1 | Tomato | cytosol | 13.05 | 13.22 |
| Solyc03g078390.2.1 | Tomato | nucleus | 7.66 | 8.07 |
| Solyc05g055100.1.1 | Tomato | endoplasmic reticulum | 4.79 | 7.78 |
| Solyc06g017970.2.1 | Tomato | nucleus | 11.23 | 7.63 |
Protein Annotations
| EnsemblPlants:Solyc03g005430.2.1 | EnsemblPlantsGene:Solyc03g005430.2 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI0002769082 |
| UniProt:K4BDW7 | MapMan:22.5.1.6 | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:303777..317879
Molecular Weight (calculated)
126853.0 Da
IEP (calculated)
6.699
GRAVY (calculated)
-0.656
Length
1149 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSAYEEAG TARSSEGVSS GQQQCQNSEA LAEWRSSEQV ENGTPSTSPP YWDCDDDEDV GPKPSELYGK YTWKIDKFSQ INKRELRSNA FDVGGYKWYI
0101: LIYPQGCDVC NHLSLFLCVA NHDKLLPGWS HFAQFTIAVV NKDPKKSKYS DTLHRFWKKE HDWGWKKFME LSKVLDGFVD ADTLIIKAQV QVIREKADRP
0201: FRCLDRQYRR ELVRVYLSNV EQICRRFVEE RRVKLGKLIE DRARWSSFCT FWMGMDQNSR RRMSKERSDS ILKVVVKNFF IEKEVTSTLV MDSLYSGLRS
0301: LEGQTVGKKS KAKNSDAEEQ LVPIVRLEKN MFVLVDDVLL LLESAALEPL PPKDEKGPQN RTKDGTSGDE FNKDSIERDE RRLTELGRRT IEIFVLAQIF
0401: SKIEVAYQEA VALKRQEELI REEEAAGLAE TEQKAKRASG KEKKSKKKQA KQKRNNHKIK DKAIDVKSAV VELYKTDLDG PICDGNEYIN DEPEAVLGKP
0501: DVLEAVSDVS DSIDCVPEVI NPDSDDRDAS PVNWGTDSSE VHPSTETSCS GLSDLSAVQN GLAGRRSPSV MDDSSSTCST DSIPSVVLNG PCRWTSSNHK
0601: NQKSPSRARN QRNKSTCKAA DWASETLSQP LDAVSDVGQQ SDMSCRAPAA EPQSSVLLSS EQQDTKKEVV ASPQRKSRKA DTERPSKEES SVQSSPRSPP
0701: KVAGSDVQQK SQMKIPVTSD PILVKRSSSD GPKLADKPVL VSDSSETAVM LKADPHKTVE PRVKDKAVQA TCVTAGKAPT SQQVTVSTTT ESFKWQHVPA
0801: MSRPLCDPLV PGPKPAAPVV SMVQTMPSLA RSVSAAGRLG SDPSPATHSY LTQSYRNAIM GSPVSGTPAS FGQPHSPISA VNSSHSYCQQ PPVISQALYL
0901: PQGLERAEPS SVRPSFSYGM VNNNGSVQNG LHWDCPQRDS SRSMSQDHPS SSSGIRNFDM FKAVNSSRAH DHLPDSLACT SGRQPQSVSA DEFPHLDIIN
1001: DLLNDDHGIG RTSIPDSSFQ SFSSGLQHLN QGFAFPGDIG TPVDLGPSSS SCRFERSRSY HDVFQHNYSG GLFDSASDMI MQTDPRLNSG HHHMDGLVPN
1101: QWQMMGSDPS FLGMRNGTID GGHQYPLPDY PNLACGVNGY GVFRPSNGL
0101: LIYPQGCDVC NHLSLFLCVA NHDKLLPGWS HFAQFTIAVV NKDPKKSKYS DTLHRFWKKE HDWGWKKFME LSKVLDGFVD ADTLIIKAQV QVIREKADRP
0201: FRCLDRQYRR ELVRVYLSNV EQICRRFVEE RRVKLGKLIE DRARWSSFCT FWMGMDQNSR RRMSKERSDS ILKVVVKNFF IEKEVTSTLV MDSLYSGLRS
0301: LEGQTVGKKS KAKNSDAEEQ LVPIVRLEKN MFVLVDDVLL LLESAALEPL PPKDEKGPQN RTKDGTSGDE FNKDSIERDE RRLTELGRRT IEIFVLAQIF
0401: SKIEVAYQEA VALKRQEELI REEEAAGLAE TEQKAKRASG KEKKSKKKQA KQKRNNHKIK DKAIDVKSAV VELYKTDLDG PICDGNEYIN DEPEAVLGKP
0501: DVLEAVSDVS DSIDCVPEVI NPDSDDRDAS PVNWGTDSSE VHPSTETSCS GLSDLSAVQN GLAGRRSPSV MDDSSSTCST DSIPSVVLNG PCRWTSSNHK
0601: NQKSPSRARN QRNKSTCKAA DWASETLSQP LDAVSDVGQQ SDMSCRAPAA EPQSSVLLSS EQQDTKKEVV ASPQRKSRKA DTERPSKEES SVQSSPRSPP
0701: KVAGSDVQQK SQMKIPVTSD PILVKRSSSD GPKLADKPVL VSDSSETAVM LKADPHKTVE PRVKDKAVQA TCVTAGKAPT SQQVTVSTTT ESFKWQHVPA
0801: MSRPLCDPLV PGPKPAAPVV SMVQTMPSLA RSVSAAGRLG SDPSPATHSY LTQSYRNAIM GSPVSGTPAS FGQPHSPISA VNSSHSYCQQ PPVISQALYL
0901: PQGLERAEPS SVRPSFSYGM VNNNGSVQNG LHWDCPQRDS SRSMSQDHPS SSSGIRNFDM FKAVNSSRAH DHLPDSLACT SGRQPQSVSA DEFPHLDIIN
1001: DLLNDDHGIG RTSIPDSSFQ SFSSGLQHLN QGFAFPGDIG TPVDLGPSSS SCRFERSRSY HDVFQHNYSG GLFDSASDMI MQTDPRLNSG HHHMDGLVPN
1101: QWQMMGSDPS FLGMRNGTID GGHQYPLPDY PNLACGVNGY GVFRPSNGL
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.