Factsheet for Solyc11g071700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007793	Potato	cytosol	98.02	98.02
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	82.18	81.37
KRG90152	Soybean	cytosol	56.62	80.23
Solyc11g006320.1.1	Tomato	cytosol	80.02	79.59
Solyc05g055090.2.1	Tomato	cytosol	80.11	79.54
KRH33402	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.5	75.46
KRG90154	Soybean	cytosol	12.15	74.59
Solyc06g073820.1.1	Tomato	cytosol	71.65	70.13
KRG90150	Soybean	cytosol	8.19	42.92
Solyc05g055100.1.1	Tomato	endoplasmic reticulum	19.62	30.83
Solyc06g053740.2.1	Tomato	cytosol	8.28	22.12
Solyc03g078390.2.1	Tomato	nucleus	15.93	16.22
Solyc09g089560.2.1	Tomato	nucleus	15.12	15.22
Solyc03g005430.2.1	Tomato	nucleus	14.94	14.45
Solyc06g053750.2.1	Tomato	nucleus	14.49	14.15
Solyc06g017970.2.1	Tomato	nucleus	15.48	10.17

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974	InterPro:IPR028889	UniProt:K4DAM7
InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917	PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972
ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF614	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc11g071700.1	EnsemblPlants:Solyc11g071700.1.1
InterPro:TRAF-like	UniParc:UPI0002769827	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:55099760..55120355

Molecular Weight (calculated)

130338.0 Da

IEP (calculated)

5.359

GRAVY (calculated)

-0.662

Length

1111 amino acids

Sequence
(BLAST)

0001: MTPAPTDEEE EMLVPRSDLV FEGPQPMEAQ AETGNDVEKQ PPEDPQTSRF TWKIDNFSRL NVKKLYSDPF VVGGYKWRIL IFPKGNNVDY LSMYLDVADS
0101: ANLPYGWSRY AQFNLSIVNQ IHNKYSIRKE TQHQFNARES DWGFTSFMPL GELYDPNKGY LVDDTCVVDA EVAVRKIVDY WSYDSKMETG FVGLKNQGAT
0201: CYMNSLLQTL YHIPYFRKAV YHMPTTENDM PSASIPLALQ SLFYKLQYSD NSVATKELTK SFGWDTYDSF LQHDVQELNR VLCEKLEEKM KGTVVEGTIQ
0301: QLFEGHHMNY IECINVDYKS TRKESFYDLQ LDVKGCADVY ASFDKYVEVE RLEGDNKYHA EQYGLQDAKK GVLFMDFPPV LQLQLKRFEY DFSRDTMVKI
0401: NDRYEFPLQL DLDRENGKYL SPEADGSVRN LYTLHSVLVH SGGVHGGHYY AFIRPTLSDQ WYKFDDERVT KEDVKRALEE QYGGEEELPQ TNPGFNNTPF
0501: KFTKYSNAYM LVYIRECDKE KIMCNVDEKD IAEHLRARLK REQEEKEQKK KEKAEAHLYT IIKVSRDEDL RQQIGKDIHF DLVDYDKVRS FRIQKQTLFS
0601: IFKEEVAKEF GVPVQSQRFW LWAKRQNHTY RPNRPLTHLE EAQTVGQLRE ASSKVQNAEL KLFLEVELGL DLRHIPPPDK TKDDIMLFFK IYDPEKEELR
0701: YAGRLFVKGT SNPTEILNKL NEMAGYAPDQ EIELYEEIKF EPIVLCEPIN KKFAFRTNQL EDGDIVCYQK SLSPESRQKL RYPDVPSFLE YVQNRQVVHF
0801: RYLEKLKEDD FCLELSKINT YDEVVERVAQ RLGLDDPSKI RLTPHNCYSQ QPKPQPIKYR GVDTLGDMLV HYNQTSDILY YEVLDIPLPE LQGLKTLKVA
0901: FHHATKDEVV TYTIRLPKQS TVGDVINDLK TKVELSNPDA ELRLLEVFYH KIYKIFPTSE KIENINDQYW TLRAEEIPEE EKNLGPNARL IHVYHFSKET
1001: AQNQMQIQNF GEPFLLVIHE GETLVQVKVR IQKKLQVPDE EFAKWKFAFL SLGRPEYLED SDILFNRFQR KDVYGAWEQY LGLEHSDNAP KRINAAYQNR
1101: PTYEKPVKIY N

Best Arabidopsis Sequence Match ( AT5G06600.1 )
(BLAST)

0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.