Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
22364583
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072539 | Potato | cytosol | 98.48 | 98.48 |
| VIT_08s0032g00600.t01 | Wine grape | cytosol | 85.83 | 86.29 |
| CDY14077 | Canola | cytosol | 83.16 | 83.6 |
| CDY04994 | Canola | cytosol | 83.07 | 83.51 |
| CDX70087 | Canola | cytosol | 83.07 | 83.51 |
| CDY55765 | Canola | cytosol | 82.98 | 83.5 |
| AT5G06600.1 | Thale cress | cytosol | 82.89 | 83.33 |
| Bra005900.1-P | Field mustard | cytosol | 82.8 | 83.32 |
| Bra009210.1-P | Field mustard | cytosol | 81.55 | 83.18 |
| CDX98939 | Canola | cytosol | 82.71 | 83.15 |
| Solyc11g071700.1.1 | Tomato | cytosol, plastid | 81.37 | 82.18 |
| CDX81009 | Canola | cytosol | 81.64 | 81.93 |
| AT3G11910.1 | Thale cress | cytosol | 81.37 | 81.88 |
| Bra028727.1-P | Field mustard | cytosol | 82.98 | 81.81 |
| CDY01069 | Canola | cytosol | 80.48 | 80.99 |
| Bra038685.1-P | Field mustard | cytosol | 79.5 | 80.94 |
| Bra034802.1-P | Field mustard | cytosol | 80.12 | 80.63 |
| Solyc05g055090.2.1 | Tomato | cytosol | 80.39 | 80.61 |
| CDY08485 | Canola | cytosol | 59.45 | 80.56 |
| Solyc11g006320.1.1 | Tomato | cytosol | 79.95 | 80.3 |
| CDY53923 | Canola | cytosol | 78.61 | 79.39 |
| Bra001426.1-P | Field mustard | cytosol | 78.61 | 79.32 |
| CDX73847 | Canola | cytosol | 76.92 | 78.67 |
| Os07t0163800-01 | Rice | cytosol, plasma membrane | 20.23 | 77.21 |
| Solyc06g073820.1.1 | Tomato | cytosol | 66.22 | 65.46 |
| CDX72290 | Canola | cytosol, mitochondrion, plastid | 10.52 | 64.84 |
| CDY72484 | Canola | cytosol | 8.91 | 60.98 |
| Solyc05g055100.1.1 | Tomato | endoplasmic reticulum | 20.23 | 32.11 |
| TraesCS3A01G176700.1 | Wheat | cytosol | 5.35 | 30.77 |
| Solyc06g053740.2.1 | Tomato | cytosol | 8.02 | 21.63 |
| Solyc03g078390.2.1 | Tomato | nucleus | 16.04 | 16.5 |
| Solyc09g089560.2.1 | Tomato | nucleus | 14.71 | 14.95 |
| Solyc03g005430.2.1 | Tomato | nucleus | 14.79 | 14.45 |
| Solyc06g053750.2.1 | Tomato | nucleus | 14.44 | 14.24 |
| Solyc06g017970.2.1 | Tomato | nucleus | 15.78 | 10.47 |
Protein Annotations
| MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 | MEROPS:C19.A53 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR028889 |
| UniProt:K4D348 | InterPro:MATH/TRAF_dom | PFAM:PF00443 | PFAM:PF00917 | PFAM:PF12436 | PFAM:PF14533 |
| ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50144 | PFscan:PS50235 | PANTHER:PTHR24006 | PANTHER:PTHR24006:SF565 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SMART:SM00061 | SUPFAM:SSF49599 | SUPFAM:SSF54001 | EnsemblPlantsGene:Solyc10g081610.1 |
| EnsemblPlants:Solyc10g081610.1.1 | InterPro:TRAF-like | UniParc:UPI0002769A71 | InterPro:USP7_ICP0-binding_dom | InterPro:USP_C | InterPro:USP_CS |
| InterPro:USP_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:62638747..62660748
Molecular Weight (calculated)
131869.0 Da
IEP (calculated)
5.361
GRAVY (calculated)
-0.649
Length
1122 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTMLNPQPLD QQEDEEMLVP HSELVEGPQP LVEGPQPMEV AASENATTGE NQAVDEPQAS RFTWTIDEFS RLSVKKLYSE PFVVGSYKWR VLIFPKGNNV
0101: ECLSMYLDVA DSATLPYGWN RYAQFSLTVV NQINPKYSVK KETQHQFNQR ESDWGFTSFM LLSDLYDPNK GYLVNDKVVI EADVAVRKVI DYWTYDSKKE
0201: TGYVGLKNQG ATCYMNSLLQ TLYHIPYFRK AVYHMPTTEN DMPSGSIPLA LQSLFYKLQY SDTSVATKEL TKSFGWDTYD SFMQHDVQEL NRVLCEKLED
0301: KMKGTVVEGT IQKLFEGHHM NYIECINVDF KSTRKESFYD LQLDVKGCRD VYASFDKYVE VERLEGDNKY HAEAHGLQDA KKGVLFIDFP PVLQLQLKRF
0401: EYDFMRDTMV KINDRYEFPL ELDLDRENGK YLSPDADRSV RNLYTLHSVL VHSGGVHGGH YYAFIRPTLS DQWYKFDDER VTKEDNKRAL EEQYGGEEEL
0501: PQTNPGFNNT PFKFTKYSNA YMLVYIRESD KDKIICDVGE KDIAEHLRIR LKKEQEEKED KRRYKAQAHL YTIIKVARDE DLREQIGKEI YFDLVDHDKV
0601: RSFRIQKQLP FNLFKEEVAK ELGIPVQFQR FWIWAKRQNH TYRPNRPLTP HEELQTVCQL REVSNKNNNA ELKLFLEVDY GLDFIPGPPP DKSKDDILLF
0701: FKLYDPEKEE LRYVGRLFVK STSKPVEILP KLNELAGFAP DQEIELFEEI KFEPSVMCER LDRKASFRFS QIEDGDIICF QKKTSPEVEE QVRFPDVPSY
0801: MEYVKNRQLV HFRALEKPKE DDFCLELAKS DTYDEVVDRV AQRLGVDDSS KIRLTPHNCY SQQPKPNPIK YRSVDHLVDM LIHYNQISDI LYYEVLDIPL
0901: PELQCLKTLK VAFHHSTKDE IEILNVRLPK QSTVGDVLEE IKSKVELSHP NAELRLLEVF YHKIYKIFPL SEKIENINDQ YWTLRAEEIP EEEKNLGPHD
1001: RLIHVYHFTK ETPQNQMQVQ NFGEPFFLVI HEGETLAEIK VRIQKKLQVS DEEFSKWKFA FLSLGRPEYL QDSDIVSNRF QRRDVYGAWE QYLGLEHADN
1101: TSKRPYINQN RHTFEKPVKI YN
0101: ECLSMYLDVA DSATLPYGWN RYAQFSLTVV NQINPKYSVK KETQHQFNQR ESDWGFTSFM LLSDLYDPNK GYLVNDKVVI EADVAVRKVI DYWTYDSKKE
0201: TGYVGLKNQG ATCYMNSLLQ TLYHIPYFRK AVYHMPTTEN DMPSGSIPLA LQSLFYKLQY SDTSVATKEL TKSFGWDTYD SFMQHDVQEL NRVLCEKLED
0301: KMKGTVVEGT IQKLFEGHHM NYIECINVDF KSTRKESFYD LQLDVKGCRD VYASFDKYVE VERLEGDNKY HAEAHGLQDA KKGVLFIDFP PVLQLQLKRF
0401: EYDFMRDTMV KINDRYEFPL ELDLDRENGK YLSPDADRSV RNLYTLHSVL VHSGGVHGGH YYAFIRPTLS DQWYKFDDER VTKEDNKRAL EEQYGGEEEL
0501: PQTNPGFNNT PFKFTKYSNA YMLVYIRESD KDKIICDVGE KDIAEHLRIR LKKEQEEKED KRRYKAQAHL YTIIKVARDE DLREQIGKEI YFDLVDHDKV
0601: RSFRIQKQLP FNLFKEEVAK ELGIPVQFQR FWIWAKRQNH TYRPNRPLTP HEELQTVCQL REVSNKNNNA ELKLFLEVDY GLDFIPGPPP DKSKDDILLF
0701: FKLYDPEKEE LRYVGRLFVK STSKPVEILP KLNELAGFAP DQEIELFEEI KFEPSVMCER LDRKASFRFS QIEDGDIICF QKKTSPEVEE QVRFPDVPSY
0801: MEYVKNRQLV HFRALEKPKE DDFCLELAKS DTYDEVVDRV AQRLGVDDSS KIRLTPHNCY SQQPKPNPIK YRSVDHLVDM LIHYNQISDI LYYEVLDIPL
0901: PELQCLKTLK VAFHHSTKDE IEILNVRLPK QSTVGDVLEE IKSKVELSHP NAELRLLEVF YHKIYKIFPL SEKIENINDQ YWTLRAEEIP EEEKNLGPHD
1001: RLIHVYHFTK ETPQNQMQVQ NFGEPFFLVI HEGETLAEIK VRIQKKLQVS DEEFSKWKFA FLSLGRPEYL QDSDIVSNRF QRRDVYGAWE QYLGLEHADN
1101: TSKRPYINQN RHTFEKPVKI YN
0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN
Arabidopsis Description
UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.