Factsheet for Bra005900.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55765	Canola	cytosol	99.64	99.64
CDX81009	Canola	cytosol	97.58	97.32
Bra009210.1-P	Field mustard	cytosol	94.53	95.82
AT5G06600.1	Thale cress	cytosol	95.16	95.07
Bra028727.1-P	Field mustard	cytosol	96.95	94.99
Bra038685.1-P	Field mustard	cytosol	86.46	87.48
Bra034802.1-P	Field mustard	cytosol	86.64	86.64
VIT_08s0032g00600.t01	Wine grape	cytosol	86.64	86.56
Bra001426.1-P	Field mustard	cytosol	84.66	84.89
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	83.32	82.8
PGSC0003DMT400072539	Potato	cytosol	83.23	82.71
Os07t0163800-01	Rice	cytosol, plasma membrane	20.18	76.53
TraesCS3A01G176700.1	Wheat	cytosol	5.74	32.82
Bra041162.1-P	Field mustard	cytosol, nucleus, plastid	3.77	21.11
Bra023279.1-P	Field mustard	cytosol	6.28	20.06
Bra019603.1-P	Field mustard	cytosol	14.71	15.98
Bra017972.1-P	Field mustard	cytosol	14.71	15.77
Bra015302.1-P	Field mustard	nucleus	14.35	15.09
Bra032518.1-P	Field mustard	nucleus	13.45	15.09
Bra010174.1-P	Field mustard	cytosol	2.96	15.0
Bra033684.1-P	Field mustard	nucleus	11.66	14.02
Bra007802.1-P	Field mustard	nucleus, plastid	16.32	10.94
Bra034251.1-P	Field mustard	nucleus	15.87	10.75

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra005900
EnsemblPlants:Bra005900.1	EnsemblPlants:Bra005900.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083
InterPro:IPR008974	InterPro:IPR028889	UniProt:M4CNW2	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917
PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235
PANTHER:PTHR24006	PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599
SUPFAM:SSF54001	InterPro:TRAF-like	UniParc:UPI000253F648	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

AT5G06600 (E=0.0) UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA03:-:1106275..1114734

Molecular Weight (calculated)

130700.0 Da

IEP (calculated)

5.702

GRAVY (calculated)

-0.645

Length

1115 amino acids

Sequence
(BLAST)

0001: MTMITPAPVD QQEDEVMLVP HSDVVDGPAQ PMEVSEAETA VSTVENQPAE EPPTLKFTWT IPNFSRQNTR KLYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVADAANL PYGWSRYAQF SLAVVNQIHT RYTIRKETQH QFNARESDWG FTSFMPLSEL YDPGRGYLAN DTVYVEAEVI VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDYKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLQLDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALDEQYG GEEELPQTNP
0501: GFNNPPFKFT KYSNAYMLVS IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRKYK AQAHLFTIIK VARDQDLREQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGIP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVELLDERP IPPPEKSKED ILLFFKLYDP
0701: EKPELRYVGR LMVKSSSKPM DITGKLNEMA GFAPDEDLEL FEEIKFEPGV MCEHLDKKTS FRLCQIEDGD IICFQKHLVK KETECRYPAV PLFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKLHTYDDVV ERVAQKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDRL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV IDELKTKVEL SHPDAELRLL EVFYHKIYKI FPLTERIENI NDQYWTVRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDSDVVYN RFQRRDVYGA FEQYLGLEHT DTTPKRAYSA
1101: NQNRHTYEKP VKIYN

Best Arabidopsis Sequence Match ( AT5G06600.1 )
(BLAST)

0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN

Arabidopsis Description

UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.