Factsheet for Bra038685.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G11910.1	Thale cress	cytosol	91.02	89.96
Bra034802.1-P	Field mustard	cytosol	90.38	89.33
Bra009210.1-P	Field mustard	cytosol	87.66	87.82
Bra001426.1-P	Field mustard	cytosol	88.29	87.5
Bra005900.1-P	Field mustard	cytosol	87.48	86.46
Bra028727.1-P	Field mustard	cytosol	87.84	85.06
VIT_08s0032g00600.t01	Wine grape	cytosol	83.76	82.71
Solyc10g081610.1.1	Tomato	cytosol, extracellular, nucleus	80.94	79.5
PGSC0003DMT400072539	Potato	cytosol	80.85	79.41
Os07t0163800-01	Rice	cytosol, plasma membrane	20.05	75.17
TraesCS3A01G176700.1	Wheat	cytosol	5.35	30.26
Bra041162.1-P	Field mustard	cytosol, nucleus, plastid	3.72	20.6
Bra023279.1-P	Field mustard	cytosol	6.26	19.77
Bra019603.1-P	Field mustard	cytosol	15.06	16.18
Bra017972.1-P	Field mustard	cytosol	15.06	15.96
Bra015302.1-P	Field mustard	nucleus	14.34	14.91
Bra032518.1-P	Field mustard	nucleus	13.16	14.59
Bra010174.1-P	Field mustard	cytosol	2.9	14.55
Bra033684.1-P	Field mustard	nucleus	11.89	14.13
Bra007802.1-P	Field mustard	nucleus, plastid	16.24	10.76
Bra034251.1-P	Field mustard	nucleus	15.79	10.56

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra038685
EnsemblPlants:Bra038685.1	EnsemblPlants:Bra038685.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083
InterPro:IPR008974	InterPro:IPR028889	UniProt:M4FC69	InterPro:MATH/TRAF_dom	PFAM:PF00443	PFAM:PF00917
PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235
PANTHER:PTHR24006	PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599
SUPFAM:SSF54001	InterPro:TRAF-like	UniParc:UPI0002545421	InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

AT3G11910 (E=0.0) UBP13 | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA01:+:26617850..26625506

Molecular Weight (calculated)

128885.0 Da

IEP (calculated)

5.705

GRAVY (calculated)

-0.676

Length

1102 amino acids

Sequence
(BLAST)

0001: MLVPHSDLVE EGPQPMEVAQ PEAAAATTVE NPPAEEIPTL KFTWSTQGFT RLNVRKLYSD VFVVGGYKWR ILIFPKGNNV DHLSMYLDVA DAASLPYGWS
0101: RYSQFSLAVV NQMNSKYSIR KETQHQFNAR ESDWGFTSFM PLSELYDPTR GYLVNDTLQI EAEVAVRKVL DYWSYDSKKE TGFVGLKNQG ATCYMNSLLQ
0201: TLYHIPYFRK AVYHMPTTEN DAPTASIPLA LQSLFYKLQY NDTRVGTKEL TKSFGWDTND SFMQHDVQEL NRILSEKLED KMKGTVVEGT IQKLFEGHHM
0301: NYIECINVDY KSTRKESFYD LQLDVKGCKD VYASFDKYVE VERLEGDNKY QAEGHGLQDA KKGVLFIDFP PVLQLQLKRF EYDFMRDTMV KINDRYEFPL
0401: QLDLDRENGK YLSPDADKSV RNLYTLHSVL VHSGGVHGGH YYAFIRPTLS DQWYKFDDER VTKEVVNRAL EEQYGGEEEL PQNNPGVNNP PIKFTKYSNA
0501: YMLVYIRECD KDKIICNVDE KDIAEHLQVR LKKEQEEKED KKNYKAQAHL FTTIKVARDE DITEQIGKSM YFDLVDHEKV RSFRIQKQTP FQQFKEEMAK
0601: EFGVPVQLQR YWIWAKRQNH TYRPNRPLLP HEGQQTVGQI REASNKANNA ELKLFLEIER GSDERPIPPP DKSPEDILLF FKLYDPENEE LRYVGRLMVK
0701: SSSKPMDIVG QLNQMAGFAP DEEIELYEEI KFEPCVLCEH LDKKTSFRLS QIENGDIICY QKPISIQENE CPYPDVPSFL EYVHNREVVR FRALEKPKED
0801: EFTMELSKLH TYDDVVERLA EKLGLSDSSK IRLTSHNCYS QQPKPQPIKY RGADLSDMLA HYNQASDILY YEVLDIPLPE LQRLKILKVA FHHATKDEVV
0901: IHNIRLPKQS TVGDVINELK TKVELSHPDA ELRLLEVFYH KIYKIFPPTE RIENINDQYW TLRAEEIPEE EKNIGPNDRL IHVYHFTKEA AQNQQVQNFG
1001: DPFFLVIHEG ETLEEIKTRI QKKLRVPDED FAKWKFASFS MGRPDYLQDT DVVYDRFQKQ RKDVYGAWEQ YLGLEHVDNT PKRAYAANQN RHAYEKPMKI
1101: YN

Best Arabidopsis Sequence Match ( AT3G11910.2 )
(BLAST)

0001: MTMMTPPPLD QEDEEMLVPN PDLVEGPQPM EVAQTDPAAT AVENPPPEDP PSLKFTWTIP MFTRLNTRKH YSDVFVVGGY KWRILIFPKG NNVDHLSMYL
0101: DVADAANLPY GWSRYSQFSL AVVNQVNNRY SIRKETQHQF NARESDWGFT SFMPLSELYE PTRGYLVNDT VLIEAEVAVR KVLDYWSYDS KKETGFVGLK
0201: NQGATCYMNS LLQTLYHIPY FRKAVYHMPT TENDAPTASI PLALQSLFYK LQYNDTSVAT KELTKSFGWD TYDSFMQHDV QELNRVLCEK LEDKMKGTVV
0301: EGTIQKLFEG HHMNYIECIN VDYKSTRKES FYDLQLDVKG CKDVYASFDK YVEVERLEGD NKYHAEGHDL QDAKKGVLFI DFPPVLQLQL KRFEYDFMRD
0401: TMVKINDRYE FPLQLDLDRE DGRYLSPDAD KSVRNLYTLH SVLVHSGGVH GGHYYAFIRP TLSDQWYKFD DERVTKEDVK RALEEQYGGE EELPQNNPGF
0501: NNPPFKFTKY SNAYMLVYIR ESDKDKIICN VDEKDIAEHL RVRLKKEQEE KEDKRKYKAQ AHLFTTIKVA RDDDITEQIG KNIYFDLVDH EKVRSFRIQK
0601: QTPFQQFKEE VAKEFGVPVQ LQRFWIWAKR QNHTYRPNRP LSPNEELQTV GQIREASNKA NNAELKLFLE IERGPDDLPI PPPEKTSEDI LLFFKLYDPE
0701: NAVLRYVGRL MVKSSSKPMD IVGQLNKMAG FAPDEEIELF EEIKFEPCVM CEQIDKKTSF RLCQIEDGDI ICYQKPLSIE ESEFRYPDVP SFLEYVQNRE
0801: LVRFRTLEKP KEDEFTMELS KLHTYDDVVE RVAEKLGLDD PSKLRLTSHN CYSQQPKPQP IKYRGVDHLS DMLVHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHSATK DEVIIHNIRL PKQSTVGDVI NELKTKVELS HQDAELRLLE VFFHKIYKIF PSTERIENIN DQYWTLRAEE IPEEEKNIGP NDRLIHVYHF
1001: TKEAGQNQQV QNFGEPFFLV IHEGETLEEI KTRIQKKLHV PDEDFAKWKF ASFSMGRPDY LLDTDVVYNR FQRRDVYGAW EQYLGLEHID NAPKRAYAAN
1101: QNRHAYEKPV KIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.