Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35362 | Canola | nucleus, plastid | 99.45 | 99.45 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 90.41 | 89.48 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 88.4 | 86.98 |
| AT2G25330.1 | Thale cress | nucleus | 34.37 | 81.67 |
| KRH61745 | Soybean | nucleus | 43.35 | 72.93 |
| VIT_04s0008g05690.t01 | Wine grape | nucleus | 72.13 | 70.59 |
| KRH52412 | Soybean | nucleus | 70.92 | 69.57 |
| Solyc06g017970.2.1 | Tomato | nucleus | 68.43 | 66.65 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 17.12 | 62.25 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 47.6 | 59.67 |
| KRH61744 | Soybean | cytosol | 22.89 | 58.81 |
| Os02t0613400-01 | Rice | extracellular | 10.14 | 56.61 |
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 28.29 | 55.41 |
| TraesCS6A01G230500.1 | Wheat | nucleus, plastid | 55.49 | 55.16 |
| EES07147 | Sorghum | nucleus, plastid | 55.62 | 55.02 |
| TraesCS6B01G251400.1 | Wheat | nucleus, plastid | 55.49 | 54.99 |
| TraesCS6D01G204500.1 | Wheat | nucleus, plastid | 55.37 | 54.87 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 55.37 | 54.55 |
| Zm00001d051075_P002 | Maize | nucleus | 55.13 | 53.63 |
| Bra009210.1-P | Field mustard | cytosol | 10.87 | 16.27 |
| Bra034802.1-P | Field mustard | cytosol | 10.87 | 16.05 |
| Bra005900.1-P | Field mustard | cytosol | 10.75 | 15.87 |
| Bra038685.1-P | Field mustard | cytosol | 10.56 | 15.79 |
| Bra028727.1-P | Field mustard | cytosol | 10.87 | 15.73 |
| Bra001426.1-P | Field mustard | cytosol | 10.02 | 14.84 |
| Bra023279.1-P | Field mustard | cytosol | 2.67 | 12.61 |
| Bra033684.1-P | Field mustard | nucleus | 5.77 | 10.25 |
| Bra032518.1-P | Field mustard | nucleus | 6.01 | 9.96 |
| Bra019603.1-P | Field mustard | cytosol | 6.07 | 9.75 |
| Bra015302.1-P | Field mustard | nucleus | 6.25 | 9.72 |
| Bra017972.1-P | Field mustard | cytosol | 5.59 | 8.85 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.03 | 8.54 |
| Bra010174.1-P | Field mustard | cytosol | 1.03 | 7.73 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra034251 | EnsemblPlants:Bra034251.1 | EnsemblPlants:Bra034251.1-P |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 |
| UniProt:M4EZK8 | InterPro:MATH/TRAF_dom | PFAM:PD936484 | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF6 | SMART:SM00061 | SUPFAM:SSF48371 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0002544EF7 |
| SEG:seg | : | : | : | : | : |
Description
AT2G25320 (E=0.0) | LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT2G25330.1); Has 59993 Blast hits to 32072 proteins in 1426 species: Archae - 584; Bacteria - 5166; Metazoa - 31897; Fungi - 4070; Plants - 2329; Viruses - 207; Other Eukaryotes - 15740 (source: NCBI BLink).
Coordinates
chrA04:-:11399126..11405070
Molecular Weight (calculated)
185644.0 Da
IEP (calculated)
5.483
GRAVY (calculated)
-0.433
Length
1647 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKQSSSEAVS SSSSTIYLSH PSVPSSSSKP LCSSSISPAE DHHLGSSRDG SGGAQEIVAV DRRGEYTAVC RWTVENFTRV KAKALWSKYF DVGGYDCRLL
0101: VYPRGDSQAL PGYISIYLQI MDPRGASSSR WDCFASYRLS IVNQVEESLT IHKDSWHRFS SKKKSHGWCD FTLNGSVLDR NKGFLFNDDS LLITADILIL
0201: NESVSSNSDS GLLYKENSLA GGPMPDVLSG RFTWRVNNFT LFKEMIKTQK IMSPVFPAGE CNLRISVYQS VVNSQEYISM CLESKETEKT MVSDRSCWCL
0301: FRMSALNQKP GCAHVHRDSY GRFAADNKSG DNTSLGWNDY MKMSDFVNPE SGFLVNDTAV FSTAFHVIKE FSSFAKNGGL VAGRNGSGAR KSDAHMGKFT
0401: WRIENFTRLK DLLKKRKVTG LCIKSKRFQI GNRDCRLIVY PRGQSQPPCH LSVFLEVTDS RSSSDWSCFV SHRLSVVNQR LEEKSVTKES QNRYSKAAKD
0501: WGWREFVTLT SLFDQDSGFL VQDTVVFSAE VLILKETSVT KDYVEAESAS QIDNSVKRSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC ELRIGVYESF
0601: DTICIYLESD QSTGTDVDNN FWVKYRMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LARDTVVFVC EILDCCPWFE FSDLEVLASD
0701: DDQDALTTDP DDIIDSEESE GISGDEEDTF RDFLSQAGFH LTFGENPSQP QVTLREKLIM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK MSCDDRSKLT
0801: KSDESSPSLM NLLMGVKVLQ QAILDLLLDI MVECCQPSEE GSYSEPSLLD AKTDGCVAST SLEATRENGV AEASQHLVDE RFQSDADATT LSTSAVQSSE
0901: MNGIDMLEKA LAIEPVSPPE TYAEQSSDTS VQSKTKWPEQ SEELLGLIVN SLKTLDSAVP QGCQEPRRRP HSAQKIALVL DRAPKHLQPD LVSLVPKLVE
1001: HSEHPLAAYA LIERLQKPEA EPALREPVYN ALSQLDCDTE VWEQILFRSV ELLNDSDEES LVAAIHFIFK TASQCQHLPG AVRSVRERLK SLGADVSVCV
1101: LEYLSKTVHN WPEIAEMILR DFNCDDSLDG NFGTLPFGPF LIGENDSISE MEDLMDKHEF YANRQFFDVY ILLEMLSISS LAVEASQTFE RAVTRGAIVV
1201: QCVAMVLEKR RAQGANLSVT NGDPVLEGEV SEQEAAGEIE FRALLSLAET LAHSKDPQVR GFVKRLYAVL FKWFPDQPFR VQILRRLVDR FTSPASSDGE
1301: LDLELRILDI LIFQEREVAR PILAMLKKVV EHANIDRAAL WHQLRTNKEE LVRLKEEKKT EIQTLTKEKS GITKKLSESE AAKTRLKCEM KAETDRFGRE
1401: KKELVEQFRD VESQLEWVRS ERQDEIDKLS SEKKTLLDRL HEAETQLSLL KTRKRDELKK TGKEKTALTE KLKVTEAARK RFEEELKRYA TENATREEVR
1501: KSLEDEIRRL TQTLGQTKEE KREKENQIAR CEAYIDGMES KLQACQQYIN TLESSLREEI SRHAPLYGAN LDSLSMKEVD TIARIHEEGL RQIHAHQQRK
1601: GNGLSHGLSH GHTLYPSTPP QLLPNGSGVH TNGHVNGSVR PWFSHHT
0101: VYPRGDSQAL PGYISIYLQI MDPRGASSSR WDCFASYRLS IVNQVEESLT IHKDSWHRFS SKKKSHGWCD FTLNGSVLDR NKGFLFNDDS LLITADILIL
0201: NESVSSNSDS GLLYKENSLA GGPMPDVLSG RFTWRVNNFT LFKEMIKTQK IMSPVFPAGE CNLRISVYQS VVNSQEYISM CLESKETEKT MVSDRSCWCL
0301: FRMSALNQKP GCAHVHRDSY GRFAADNKSG DNTSLGWNDY MKMSDFVNPE SGFLVNDTAV FSTAFHVIKE FSSFAKNGGL VAGRNGSGAR KSDAHMGKFT
0401: WRIENFTRLK DLLKKRKVTG LCIKSKRFQI GNRDCRLIVY PRGQSQPPCH LSVFLEVTDS RSSSDWSCFV SHRLSVVNQR LEEKSVTKES QNRYSKAAKD
0501: WGWREFVTLT SLFDQDSGFL VQDTVVFSAE VLILKETSVT KDYVEAESAS QIDNSVKRSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC ELRIGVYESF
0601: DTICIYLESD QSTGTDVDNN FWVKYRMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LARDTVVFVC EILDCCPWFE FSDLEVLASD
0701: DDQDALTTDP DDIIDSEESE GISGDEEDTF RDFLSQAGFH LTFGENPSQP QVTLREKLIM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK MSCDDRSKLT
0801: KSDESSPSLM NLLMGVKVLQ QAILDLLLDI MVECCQPSEE GSYSEPSLLD AKTDGCVAST SLEATRENGV AEASQHLVDE RFQSDADATT LSTSAVQSSE
0901: MNGIDMLEKA LAIEPVSPPE TYAEQSSDTS VQSKTKWPEQ SEELLGLIVN SLKTLDSAVP QGCQEPRRRP HSAQKIALVL DRAPKHLQPD LVSLVPKLVE
1001: HSEHPLAAYA LIERLQKPEA EPALREPVYN ALSQLDCDTE VWEQILFRSV ELLNDSDEES LVAAIHFIFK TASQCQHLPG AVRSVRERLK SLGADVSVCV
1101: LEYLSKTVHN WPEIAEMILR DFNCDDSLDG NFGTLPFGPF LIGENDSISE MEDLMDKHEF YANRQFFDVY ILLEMLSISS LAVEASQTFE RAVTRGAIVV
1201: QCVAMVLEKR RAQGANLSVT NGDPVLEGEV SEQEAAGEIE FRALLSLAET LAHSKDPQVR GFVKRLYAVL FKWFPDQPFR VQILRRLVDR FTSPASSDGE
1301: LDLELRILDI LIFQEREVAR PILAMLKKVV EHANIDRAAL WHQLRTNKEE LVRLKEEKKT EIQTLTKEKS GITKKLSESE AAKTRLKCEM KAETDRFGRE
1401: KKELVEQFRD VESQLEWVRS ERQDEIDKLS SEKKTLLDRL HEAETQLSLL KTRKRDELKK TGKEKTALTE KLKVTEAARK RFEEELKRYA TENATREEVR
1501: KSLEDEIRRL TQTLGQTKEE KREKENQIAR CEAYIDGMES KLQACQQYIN TLESSLREEI SRHAPLYGAN LDSLSMKEVD TIARIHEEGL RQIHAHQQRK
1601: GNGLSHGLSH GHTLYPSTPP QLLPNGSGVH TNGHVNGSVR PWFSHHT
0001: MKQSSSEAVS SSSSSAAADQ SHPSVSSSSS EKPLSSSSIS PAEDLQVGSS RDGSGGAQEI VAVDRPGEYS ALCRWTVESF TRVKAKALWS KYFDVGGYDC
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT2G25320]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.