Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G230500.1 | Wheat | nucleus, plastid | 99.16 | 99.46 |
| TraesCS6B01G251400.1 | Wheat | nucleus, plastid | 98.8 | 98.8 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 96.21 | 95.63 |
| EES07147 | Sorghum | nucleus, plastid | 82.13 | 81.98 |
| Zm00001d051075_P002 | Maize | nucleus | 81.05 | 79.56 |
| Os02t0613400-01 | Rice | extracellular | 13.78 | 77.63 |
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 32.97 | 65.16 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 51.44 | 65.07 |
| VIT_04s0008g05690.t01 | Wine grape | nucleus | 61.97 | 61.2 |
| KRH52412 | Soybean | nucleus | 61.19 | 60.57 |
| KRH61745 | Soybean | nucleus | 35.26 | 59.86 |
| AT2G25330.1 | Thale cress | nucleus | 24.91 | 59.74 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 16.13 | 59.16 |
| Solyc06g017970.2.1 | Tomato | nucleus | 58.97 | 57.95 |
| KRH61744 | Soybean | cytosol | 21.78 | 56.47 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 56.44 | 56.03 |
| CDY11532 | Canola | nucleus, plastid | 55.54 | 55.87 |
| CDY58924 | Canola | nucleus, plastid | 55.6 | 55.86 |
| CDX76975 | Canola | nucleus, plastid | 54.93 | 55.77 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 55.84 | 55.77 |
| Bra034251.1-P | Field mustard | nucleus | 54.87 | 55.37 |
| CDY35362 | Canola | nucleus, plastid | 54.57 | 55.07 |
| VIT_11s0016g05880.t01 | Wine grape | mitochondrion | 45.91 | 50.3 |
| TraesCS4D01G165800.1 | Wheat | unclear | 10.83 | 16.09 |
| TraesCS5D01G123300.4 | Wheat | cytosol | 10.77 | 15.88 |
| TraesCS2D01G249100.1 | Wheat | nucleus | 10.35 | 15.37 |
| TraesCS3D01G307100.1 | Wheat | cytosol | 9.27 | 13.95 |
| TraesCS4D01G266600.2 | Wheat | mitochondrion, nucleus | 6.98 | 10.8 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 6.56 | 9.71 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 7.34 | 9.49 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 7.34 | 8.79 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G204500.1 | EnsemblPlantsGene:TraesCS6D01G204500 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF6 | PFAM:PD936484 | PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | TIGR:cd00121 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:289719911..289729040
Molecular Weight (calculated)
184434.0 Da
IEP (calculated)
5.461
GRAVY (calculated)
-0.371
Length
1662 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKPTTVSPPA AAPAAAAPAT DDPSPSHSDP ASATFSVERR GDASASCRWT LPDFPRTRAR TFYSRYFEVG GFDCRLLLYP RGDTQSLPGY LSLYLQVLDP
0101: KTPSSSSSST TTTTSSKWDC FLSYRLSVVH PSDNSKSLAR DSWHRFSSKK RSHGWCDFAP SAAASFLLPP HDSLVIAADI SVLSETASFS EADGRFTWKV
0201: FNFSLFREMI RTQKIMSPAF FPAAAAAGGS DCGLRISVYQ SNVSGAEHLS VCLEGKEPVV QATSASSASA LASTSAGSGV PDADRGCWCL FRVSILNQKP
0301: GGSHIHRDSY GRFGADSASL GWGDYLKMDE FLAADGGYLF DGAVVFNASV HVIKESNSFT RSLPPVAGIS GAGGGRSGTR KSDGHFGKFV WRIENFTRLK
0401: ELLKKRKITG LCIKSRRFQV GNRDCRLIVY PRGQSQPPCH LSVFLEVTDP RNTTSEWTCF VSHRLSVINQ KGEEKSIMKE SQNRYSKSAK DWGWREFLTL
0501: TSLFDQDAGF LVQDTVVFSA EVLILKETAT MQELSDEDSE ICSSSSGYQI DTLPKHTSFT WKVENFLSFK EIMETRKIFS KYFQAGGCEL RIGVYESFDT
0601: MCIYLESDQS SGVDPDKNFW VHYKMAILNQ KNSLKTVCKE SSICTKTWNN SVLQFMKVSD ILDPEAGFLV RDTIVFVCEI IDCCPWFDFS DLEVFASDDD
0701: QDELSTDPDE LIKSEDSDDV SGDEEDMFRN LLSRAGFSLT YGDNYTQPQV TLREKILTDA SAIAGFLTGL RVYLDNPAKV KRMLLPAKVS TKGGGKKDSS
0801: KCDSSSTSLI NLLMGVSVLK QAIIDLLLDI MVECCQPSDE RSSYGSSSSS SKTAPDSNGA SSPSELIVEG EQTECACRNQ YETAESDTVN FGRNLGLENA
0901: ELNANEMPVK ILEQSSCPPE TPAIDLPGDE SSDQAPGTKW PDQSVELLGL IVNSLKALDC AVPHGCPEPR KRPKSVQKIA LVLEKAPKKL QPDFIALVPK
1001: LVDGSEHSLA SCALLDHLEK ADAEPSLRLP VFGALSELEF DADVWKRVSF HALELLSDSN DEPLVAAISY VLKAASQCQH IPQAVRAVRW RLKRLGADVP
1101: PCVLEFLSKT VHNWPDVAEA LLKDIDSEPE PDNSCLSTPS STCSKDGLSA EGMPSWQEQA VHGSNHLSDV FVLIEMLSVP GLFVEVARVF ERALLQGAFG
1201: LQLVAMVLER RHSHKLSSKS GAVVYDLQSK QVLLDGQFEP SPIQEGDFTS VLALGEVLSL STSARVQDFV RMLYAIMFKI YAEDHYRCRF LKGLVDRATN
1301: TSDNCREVDI DMDVLVFLVK EEFGIARPVL NMMREAAEVA QADRANLWHQ ICATEDENIR LREEMDMEQT KFTNEKAALA QRLTESEATT GHLRSELKAE
1401: KDRYIREKKE LSRQMREIEN QMEWVRSEKD EQIAKLSADR KNLHDRVSEA ETQLSQFKAR KREEIKKVTT EKNTLAERLK NAEASRKRFD DELKRHAAET
1501: QAREEIRKSL EAEVRRLTHK VGQTEGEKKE KEDQISRCEA YIDGMESKLQ VCQQYIRTLE TSLQEEMARH APLYGVGVEA LSLEELETLA NIHEQSLRQI
1601: HTIRQRKGSS HLLSVPGLFP SSSMAVGPPS SLIHTSSIAP NGVGTHGNGH MNNAVDRWFN QT
0101: KTPSSSSSST TTTTSSKWDC FLSYRLSVVH PSDNSKSLAR DSWHRFSSKK RSHGWCDFAP SAAASFLLPP HDSLVIAADI SVLSETASFS EADGRFTWKV
0201: FNFSLFREMI RTQKIMSPAF FPAAAAAGGS DCGLRISVYQ SNVSGAEHLS VCLEGKEPVV QATSASSASA LASTSAGSGV PDADRGCWCL FRVSILNQKP
0301: GGSHIHRDSY GRFGADSASL GWGDYLKMDE FLAADGGYLF DGAVVFNASV HVIKESNSFT RSLPPVAGIS GAGGGRSGTR KSDGHFGKFV WRIENFTRLK
0401: ELLKKRKITG LCIKSRRFQV GNRDCRLIVY PRGQSQPPCH LSVFLEVTDP RNTTSEWTCF VSHRLSVINQ KGEEKSIMKE SQNRYSKSAK DWGWREFLTL
0501: TSLFDQDAGF LVQDTVVFSA EVLILKETAT MQELSDEDSE ICSSSSGYQI DTLPKHTSFT WKVENFLSFK EIMETRKIFS KYFQAGGCEL RIGVYESFDT
0601: MCIYLESDQS SGVDPDKNFW VHYKMAILNQ KNSLKTVCKE SSICTKTWNN SVLQFMKVSD ILDPEAGFLV RDTIVFVCEI IDCCPWFDFS DLEVFASDDD
0701: QDELSTDPDE LIKSEDSDDV SGDEEDMFRN LLSRAGFSLT YGDNYTQPQV TLREKILTDA SAIAGFLTGL RVYLDNPAKV KRMLLPAKVS TKGGGKKDSS
0801: KCDSSSTSLI NLLMGVSVLK QAIIDLLLDI MVECCQPSDE RSSYGSSSSS SKTAPDSNGA SSPSELIVEG EQTECACRNQ YETAESDTVN FGRNLGLENA
0901: ELNANEMPVK ILEQSSCPPE TPAIDLPGDE SSDQAPGTKW PDQSVELLGL IVNSLKALDC AVPHGCPEPR KRPKSVQKIA LVLEKAPKKL QPDFIALVPK
1001: LVDGSEHSLA SCALLDHLEK ADAEPSLRLP VFGALSELEF DADVWKRVSF HALELLSDSN DEPLVAAISY VLKAASQCQH IPQAVRAVRW RLKRLGADVP
1101: PCVLEFLSKT VHNWPDVAEA LLKDIDSEPE PDNSCLSTPS STCSKDGLSA EGMPSWQEQA VHGSNHLSDV FVLIEMLSVP GLFVEVARVF ERALLQGAFG
1201: LQLVAMVLER RHSHKLSSKS GAVVYDLQSK QVLLDGQFEP SPIQEGDFTS VLALGEVLSL STSARVQDFV RMLYAIMFKI YAEDHYRCRF LKGLVDRATN
1301: TSDNCREVDI DMDVLVFLVK EEFGIARPVL NMMREAAEVA QADRANLWHQ ICATEDENIR LREEMDMEQT KFTNEKAALA QRLTESEATT GHLRSELKAE
1401: KDRYIREKKE LSRQMREIEN QMEWVRSEKD EQIAKLSADR KNLHDRVSEA ETQLSQFKAR KREEIKKVTT EKNTLAERLK NAEASRKRFD DELKRHAAET
1501: QAREEIRKSL EAEVRRLTHK VGQTEGEKKE KEDQISRCEA YIDGMESKLQ VCQQYIRTLE TSLQEEMARH APLYGVGVEA LSLEELETLA NIHEQSLRQI
1601: HTIRQRKGSS HLLSVPGLFP SSSMAVGPPS SLIHTSSIAP NGVGTHGNGH MNNAVDRWFN QT
0001: MMKQSSSEAV SSSSSSAAAD QSHPSVSSSS SEKPLSSSSI SPAEDLQVGS SRDGSGGAQE IVAVDRPGEY SALCRWTVES FTRVKAKALW SKYFDVGGYD
0101: CRLLVYPRGD SQALPGYISI YLQIMDPRGT TSSRWDCFAS YRLSIVNLVD DSLTIHKDSW HRFSSKKKSH GWCDFTLNSS ILDPKMGFLF NNDSLLITAD
0201: ILILNESVSF SRDNNNEGQS LYKENSIAGP MPDVLSGKFT WKVNNFSLFK DMIKTQKIMS PVFPAGECNL RISVYQSVVN SQEYISMCLE SKETEKTLVS
0301: DRSCWCLFRM SALNQKPGCT HMHRDSYGRF AADNKSGDNT SLGWNDYMKM SEFVNPEAGF LLDDMAVFST SFHVIKEFSS FTKNGGLIGG RNGAGARKSD
0401: GHMGKFTWRI ENFTRLKDLL KKRKITGLCI KSKRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRSS SDWSCFVSHR LSVVNQRLEE KSVTKESQNR
0501: YSKAAKDWGW REFVTLTSLF DQDSGFLVQD TVVFSAEVLI LKETSATKEY VEADSTNSVS PTDNSVKKSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC
0601: ELRIGVYESF DTICIYLESD QSAGTDVDNN FWVKYKMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LVRDTVVFVC EILDCCPWFE
0701: FSDLEVLASD DDQDALTTDP DEIIDSEESE GISGDEEDTF RDFLSRAGFH LTFGENPSQP QVTLREKLLM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK
0801: ISCNDRSKLI KSDESSPSLM NLLMGVKVLQ QAIIDLLLDI MVECCQPSEE GSHSEPSLLS PKTDGCVAAT SSESTRERGA AEPSQHLVDE RFKSDTDATL
0901: STSAVPSSEM NGIDLLEKAL AIEPMSPPTT SAGQSSDASV QSKTKWPEQS EELLGLIVNS LKTLDAAVPQ GCPEPRRRPH SAQKIALVLD RAPKHLQPDL
1001: VSLVPKLVEH SEHPLAALAL IERLQKPEAE PALREPVYNA LSQLECDSEV WEDILSQSFE LLSDLNEESL VAAIHFTFKT ASQCQHLPEA VNAVRERLKS
1101: LGADVSLCVL DYLSKTVHSW PGIAEMILRD INTDDSVGAN FATLPCGPFL IGENETASEM ADLMEEHIFY ANRQFFDVYI LLEMLSISCL AEEASQTFER
1201: AVARGAIVAQ AVAMVLEKQR VQSPNLNATS GDASLKHQDP VLEGEASEQP ATGGTEFRII LNLAETLTHS RDPQVRGFVK MLYTILFKWF PDQPFRVQIL
1301: RRLVDRFTSP TSSSHDLDLE LEILAILIFQ EQEVARPVLA MLKKVVEHAN IDRAALWHQL RANKEELVRL KEEKKIEIQS MTKEKSSITQ KLSESEAANT
1401: RLKSEMKAEA DRFSREKKDL VEQFRDVESQ LEWIRSERQD EIDKLSSEKK TLLDRLHEAE TQLALQKTRK RDELKKVGKE KNALTEKLKV TEAARKRFEE
1501: ELKRYATENV TREELRKSLE DQIRQLTQTV GQTKEEKREK EDQIARCEAY IDGMESKLQA CQQYIHTLES SLREEISRHA PLYGANLESL SMKELDTIAR
1601: IHEEGLRQIH ALQQRKGHTL SHGLPQGHTL YPTTPPQLPP MAIGLPPQLI PNGSGVHSNG HINGSVRPWF SHHT
0101: CRLLVYPRGD SQALPGYISI YLQIMDPRGT TSSRWDCFAS YRLSIVNLVD DSLTIHKDSW HRFSSKKKSH GWCDFTLNSS ILDPKMGFLF NNDSLLITAD
0201: ILILNESVSF SRDNNNEGQS LYKENSIAGP MPDVLSGKFT WKVNNFSLFK DMIKTQKIMS PVFPAGECNL RISVYQSVVN SQEYISMCLE SKETEKTLVS
0301: DRSCWCLFRM SALNQKPGCT HMHRDSYGRF AADNKSGDNT SLGWNDYMKM SEFVNPEAGF LLDDMAVFST SFHVIKEFSS FTKNGGLIGG RNGAGARKSD
0401: GHMGKFTWRI ENFTRLKDLL KKRKITGLCI KSKRFQIGNR DCRLIVYPRG QSQPPCHLSV FLEVTDSRSS SDWSCFVSHR LSVVNQRLEE KSVTKESQNR
0501: YSKAAKDWGW REFVTLTSLF DQDSGFLVQD TVVFSAEVLI LKETSATKEY VEADSTNSVS PTDNSVKKSS FTWKVENFLA FKEIMETRKI FSKFFQAGGC
0601: ELRIGVYESF DTICIYLESD QSAGTDVDNN FWVKYKMGIL NQKNPAKSVW KESSICTKTW NNSVLQFMKV SDMLEADAGF LVRDTVVFVC EILDCCPWFE
0701: FSDLEVLASD DDQDALTTDP DEIIDSEESE GISGDEEDTF RDFLSRAGFH LTFGENPSQP QVTLREKLLM DAGAIAGFLT GLRVYLDDPT KVKRLLLPTK
0801: ISCNDRSKLI KSDESSPSLM NLLMGVKVLQ QAIIDLLLDI MVECCQPSEE GSHSEPSLLS PKTDGCVAAT SSESTRERGA AEPSQHLVDE RFKSDTDATL
0901: STSAVPSSEM NGIDLLEKAL AIEPMSPPTT SAGQSSDASV QSKTKWPEQS EELLGLIVNS LKTLDAAVPQ GCPEPRRRPH SAQKIALVLD RAPKHLQPDL
1001: VSLVPKLVEH SEHPLAALAL IERLQKPEAE PALREPVYNA LSQLECDSEV WEDILSQSFE LLSDLNEESL VAAIHFTFKT ASQCQHLPEA VNAVRERLKS
1101: LGADVSLCVL DYLSKTVHSW PGIAEMILRD INTDDSVGAN FATLPCGPFL IGENETASEM ADLMEEHIFY ANRQFFDVYI LLEMLSISCL AEEASQTFER
1201: AVARGAIVAQ AVAMVLEKQR VQSPNLNATS GDASLKHQDP VLEGEASEQP ATGGTEFRII LNLAETLTHS RDPQVRGFVK MLYTILFKWF PDQPFRVQIL
1301: RRLVDRFTSP TSSSHDLDLE LEILAILIFQ EQEVARPVLA MLKKVVEHAN IDRAALWHQL RANKEELVRL KEEKKIEIQS MTKEKSSITQ KLSESEAANT
1401: RLKSEMKAEA DRFSREKKDL VEQFRDVESQ LEWIRSERQD EIDKLSSEKK TLLDRLHEAE TQLALQKTRK RDELKKVGKE KNALTEKLKV TEAARKRFEE
1501: ELKRYATENV TREELRKSLE DQIRQLTQTV GQTKEEKREK EDQIARCEAY IDGMESKLQA CQQYIHTLES SLREEISRHA PLYGANLESL SMKELDTIAR
1601: IHEEGLRQIH ALQQRKGHTL SHGLPQGHTL YPTTPPQLPP MAIGLPPQLI PNGSGVHSNG HINGSVRPWF SHHT
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT2G25320]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.