Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0613400-01 | Rice | extracellular | 23.42 | 66.78 |
| KRH61744 | Soybean | cytosol | 47.92 | 62.87 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 88.58 | 56.7 |
| VIT_04s0008g05690.t01 | Wine grape | nucleus | 68.85 | 34.4 |
| KRH52412 | Soybean | nucleus | 66.83 | 33.47 |
| EES07147 | Sorghum | nucleus, plastid | 65.76 | 33.21 |
| TraesCS6A01G230500.1 | Wheat | nucleus, plastid | 65.16 | 33.07 |
| TraesCS6D01G204500.1 | Wheat | nucleus, plastid | 65.16 | 32.97 |
| TraesCS6B01G251400.1 | Wheat | nucleus, plastid | 64.92 | 32.85 |
| HORVU0Hr1G016000.5 | Barley | nucleus | 64.92 | 32.66 |
| Zm00001d051075_P002 | Maize | nucleus | 64.21 | 31.9 |
| Solyc06g017970.2.1 | Tomato | nucleus | 63.5 | 31.58 |
| CDY11532 | Canola | nucleus, plastid | 57.19 | 29.12 |
| Bra007802.1-P | Field mustard | nucleus, plastid | 57.07 | 28.85 |
| CDY58924 | Canola | nucleus, plastid | 56.72 | 28.84 |
| AT2G25320.3 | Thale cress | nucleus, plastid | 56.84 | 28.55 |
| CDX76975 | Canola | nucleus, plastid | 55.53 | 28.53 |
| Bra034251.1-P | Field mustard | nucleus | 55.41 | 28.29 |
| CDY35362 | Canola | nucleus, plastid | 55.17 | 28.17 |
| VIT_11s0016g05880.t01 | Wine grape | mitochondrion | 47.56 | 26.37 |
| KRH61745 | Soybean | nucleus | 9.75 | 8.38 |
| GSMUA_Achr5P02720_001 | Banana | cytosol | 7.61 | 5.74 |
| GSMUA_Achr10P... | Banana | cytosol | 7.61 | 5.74 |
| GSMUA_Achr11P... | Banana | nucleus | 7.13 | 5.49 |
| GSMUA_Achr4P28400_001 | Banana | cytosol | 7.25 | 5.47 |
| GSMUA_Achr4P22710_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 7.25 | 5.3 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 2.5 | 4.64 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 4.4 | 3.44 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 4.88 | 2.9 |
| GSMUA_Achr6P14230_001 | Banana | cytosol | 0.24 | 0.92 |
| AT2G25330.1 | Thale cress | nucleus | 0.12 | 0.14 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P03030_001 | EnsemblPlants:GSMUA_Achr6T03030_001 | EnsemblPlantsGene:GSMUA_Achr6G03030_001 | ncoils:Coil | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF6 |
| PFAM:PD936484 | SEG:seg | UniParc:UPI0002952E37 | UniProt:M0T3Q1 | MapMan:35.2 | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G03030_001]
Coordinates
chr6:-:2076297..2082288
Molecular Weight (calculated)
93805.2 Da
IEP (calculated)
5.028
GRAVY (calculated)
-0.315
Length
841 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGAIAGFL TSLRVYLDDP AKVKRLLLPT KLSSSSCSKK DASNGDANSP SLMNLLMGVK VLQQAIIDLL IDIMVECCQP SEGRTGYDSS ETSSKTSGSS
101: GASTPPETGG DSETKWPEQS EELLGLIINS LRALDSAVPQ GCPEPRRRPQ TVQKIILVLD KAPKHLLPDL ITLVPKLIDP SEHSLAACAL LDRLQKPDAE
201: PSLQLSVFGT LGQLEFGSEV WERILYKTFE LLMDCSDEHL VAAMSFVFKA ASQCQHLPQA VRAFRLRLKS LGTEVPQCVL DILTKILHTS ADVAEAIMSD
301: IDSDSGLDGN CTISCDTYSI GANEISPDGL HVGIDQVVHG CHNHTDVYIL IEMLSIPGLF VEVSQVFERA LIRGAIGLQS IALVLERRHS QMLNIKSRSI
401: LDDSQNRQVL VDGSIDSLPV QEDDFTSVLS LGEVLSLSRD VRVQDFVRML YAIMFKIYAE EHYRFRMLKG LVERATNMSN SCRVVDIDMD VLVFLVREED
501: GIARPVMNML REVAEVAQVD RSNLWHQICS VEVEHIRFRE EKQAEISKVA DEKASLSQRL NESEATTNRL KAELKAEVEQ YARERKELTE HMLDIENQLE
601: WLRSEKDEEI AKLSADRRVL QDRLHDAETQ LSQLKTRKRD ELKRVVKEKN ALAERLKSAE AARRRFDEEL KRYATETVTR EEVRQSLEDE VRRLTQTVGQ
701: TEGEKREKEE QVARCEAYID GMEATLQACQ QYIHTLEASL QEEMARHAPL YGAGLEALSM KELETLARIH EEGLRQIHAI QQMKNGNNSL VSGQSLPQVH
801: GLYSSAPPMP VGMPPSINPN GVGIHGNGHM NGSVGPWFSP T
101: GASTPPETGG DSETKWPEQS EELLGLIINS LRALDSAVPQ GCPEPRRRPQ TVQKIILVLD KAPKHLLPDL ITLVPKLIDP SEHSLAACAL LDRLQKPDAE
201: PSLQLSVFGT LGQLEFGSEV WERILYKTFE LLMDCSDEHL VAAMSFVFKA ASQCQHLPQA VRAFRLRLKS LGTEVPQCVL DILTKILHTS ADVAEAIMSD
301: IDSDSGLDGN CTISCDTYSI GANEISPDGL HVGIDQVVHG CHNHTDVYIL IEMLSIPGLF VEVSQVFERA LIRGAIGLQS IALVLERRHS QMLNIKSRSI
401: LDDSQNRQVL VDGSIDSLPV QEDDFTSVLS LGEVLSLSRD VRVQDFVRML YAIMFKIYAE EHYRFRMLKG LVERATNMSN SCRVVDIDMD VLVFLVREED
501: GIARPVMNML REVAEVAQVD RSNLWHQICS VEVEHIRFRE EKQAEISKVA DEKASLSQRL NESEATTNRL KAELKAEVEQ YARERKELTE HMLDIENQLE
601: WLRSEKDEEI AKLSADRRVL QDRLHDAETQ LSQLKTRKRD ELKRVVKEKN ALAERLKSAE AARRRFDEEL KRYATETVTR EEVRQSLEDE VRRLTQTVGQ
701: TEGEKREKEE QVARCEAYID GMEATLQACQ QYIHTLEASL QEEMARHAPL YGAGLEALSM KELETLARIH EEGLRQIHAI QQMKNGNNSL VSGQSLPQVH
801: GLYSSAPPMP VGMPPSINPN GVGIHGNGHM NGSVGPWFSP T
0001: MKQSSSEAVS SSSSSAAADQ SHPSVSSSSS EKPLSSSSIS PAEDLQVGSS RDGSGGAQEI VAVDRPGEYS ALCRWTVESF TRVKAKALWS KYFDVGGYDC
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT
0101: RLLVYPRGDS QALPGYISIY LQIMDPRGTT SSRWDCFASY RLSIVNLVDD SLTIHKDSWH RFSSKKKSHG WCDFTLNSSI LDPKMGFLFN NDSLLITADI
0201: LILNESVSFS RDNNNEGQSL YKENSIAGPM PDVLSGKFTW KVNNFSLFKD MIKTQKIMSP VFPAGECNLR ISVYQSVVNS QEYISMCLES KETEKTLVSD
0301: RSCWCLFRMS ALNQKPGCTH MHRDSYGRFA ADNKSGDNTS LGWNDYMKMS EFVNPEAGFL LDDMAVFSTS FHVIKEFSSF TKNGGLIGGR NGAGARKSDG
0401: HMGKFTWRIE NFTRLKDLLK KRKITGLCIK SKRFQIGNRD CRLIVYPRGQ SQPPCHLSVF LEVTDSRSSS DWSCFVSHRL SVVNQRLEEK SVTKESQNRY
0501: SKAAKDWGWR EFVTLTSLFD QDSGFLVQDT VVFSAEVLIL KETSATKEYV EADSTNSVSP TDNSVKKSSF TWKVENFLAF KEIMETRKIF SKFFQAGGCE
0601: LRIGVYESFD TICIYLESDQ SAGTDVDNNF WVKYKMGILN QKNPAKSVWK ESSICTKTWN NSVLQFMKVS DMLEADAGFL VRDTVVFVCE ILDCCPWFEF
0701: SDLEVLASDD DQDALTTDPD EIIDSEESEG ISGDEEDTFR DFLSRAGFHL TFGENPSQPQ VTLREKLLMD AGAIAGFLTG LRVYLDDPTK VKRLLLPTKI
0801: SCNDRSKLIK SDESSPSLMN LLMGVKVLQQ AIIDLLLDIM VECCQPSEEG SHSEPSLLSP KTDGCVAATS SESTRERGAA EPSQHLVDER FKSDTDATLS
0901: TSAVPSSEMN GIDLLEKALA IEPMSPPTTS AGQSSDASVQ SKTKWPEQSE ELLGLIVNSL KTLDAAVPQG CPEPRRRPHS AQKIALVLDR APKHLQPDLV
1001: SLVPKLVEHS EHPLAALALI ERLQKPEAEP ALREPVYNAL SQLECDSEVW EDILSQSFEL LSDLNEESLV AAIHFTFKTA SQCQHLPEAV NAVRERLKSL
1101: GADVSLCVLD YLSKTVHSWP GIAEMILRDI NTDDSVGANF ATLPCGPFLI GENETASEMA DLMEEHIFYA NRQFFDVYIL LEMLSISCLA EEASQTFERA
1201: VARGAIVAQA VAMVLEKQRV QSPNLNATSG DASLKHQDPV LEGEASEQPA TGGTEFRIIL NLAETLTHSR DPQVRGFVKM LYTILFKWFP DQPFRVQILR
1301: RLVDRFTSPT SSSHDLDLEL EILAILIFQE QEVARPVLAM LKKVVEHANI DRAALWHQLR ANKEELVRLK EEKKIEIQSM TKEKSSITQK LSESEAANTR
1401: LKSEMKAEAD RFSREKKDLV EQFRDVESQL EWIRSERQDE IDKLSSEKKT LLDRLHEAET QLALQKTRKR DELKKVGKEK NALTEKLKVT EAARKRFEEE
1501: LKRYATENVT REELRKSLED QIRQLTQTVG QTKEEKREKE DQIARCEAYI DGMESKLQAC QQYIHTLESS LREEISRHAP LYGANLESLS MKELDTIARI
1601: HEEGLRQIHA LQQRKGHTLS HGLPQGHTLY PTTPPQLPPM AIGLPPQLIP NGSGVHSNGH INGSVRPWFS HHT
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT2G25320]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.