Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P02720_001 | Banana | cytosol | 94.26 | 94.26 |
| GSMUA_Achr4P22710_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 93.18 | 90.27 |
| Os12t0489200-01 | Rice | cytosol | 3.41 | 88.37 |
| VIT_13s0073g00610.t01 | Wine grape | cytosol | 87.26 | 87.26 |
| GSMUA_Achr10P... | Banana | cytosol | 86.73 | 86.73 |
| EES15989 | Sorghum | cytosol | 86.82 | 86.27 |
| Os12t0489100-01 | Rice | cytosol, extracellular, plasma membrane | 42.33 | 85.66 |
| HORVU5Hr1G031980.4 | Barley | cytosol | 85.83 | 85.45 |
| VIT_06s0009g00960.t01 | Wine grape | cytosol | 85.29 | 85.22 |
| TraesCS5A01G105900.1 | Wheat | cytosol | 85.47 | 85.17 |
| TraesCS5D01G123300.4 | Wheat | cytosol | 85.83 | 84.92 |
| TraesCS5B01G111000.7 | Wheat | cytosol | 85.65 | 84.74 |
| TraesCS4D01G165800.1 | Wheat | unclear | 85.02 | 84.72 |
| EES09985 | Sorghum | cytosol | 84.75 | 84.53 |
| TraesCS4A01G163000.1 | Wheat | cytosol | 84.3 | 84.15 |
| Solyc11g006320.1.1 | Tomato | cytosol | 81.61 | 81.47 |
| Zm00001d041035_P002 | Maize | cytosol | 83.05 | 81.3 |
| Zm00001d023640_P004 | Maize | cytosol | 81.17 | 79.95 |
| Solyc05g055090.2.1 | Tomato | cytosol | 80.0 | 79.71 |
| HORVU4Hr1G034950.2 | Barley | cytosol | 77.76 | 77.55 |
| Zm00001d052943_P023 | Maize | plastid | 74.35 | 61.91 |
| GSMUA_Achr6P14230_001 | Banana | cytosol | 9.51 | 48.62 |
| GSMUA_Achr11P... | Banana | nucleus | 15.87 | 16.21 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 14.8 | 15.33 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 14.89 | 11.76 |
| GSMUA_Achr6P03040_001 | Banana | nucleus | 4.75 | 11.7 |
| GSMUA_Achr5P23550_001 | Banana | plastid | 10.22 | 8.68 |
| GSMUA_Achr6P03030_001 | Banana | cytosol, nucleus, plastid | 5.47 | 7.25 |
Protein Annotations
| MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | EnsemblPlantsGene:GSMUA_Achr4G28400_001 | EnsemblPlants:GSMUA_Achr4P28400_001 | EnsemblPlants:GSMUA_Achr4T28400_001 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:IPR028889 | UniProt:M0SSV2 | InterPro:MATH/TRAF_dom | PFAM:PF00443 | PFAM:PF00917 |
| PFAM:PF12436 | PFAM:PF14533 | ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50144 | PFscan:PS50235 |
| PANTHER:PTHR24006 | PANTHER:PTHR24006:SF577 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SMART:SM00061 | SUPFAM:SSF49599 |
| SUPFAM:SSF54001 | InterPro:TRAF-like | UniParc:UPI0002967215 | InterPro:USP7_ICP0-binding_dom | InterPro:USP_C | InterPro:USP_CS |
| InterPro:USP_dom | SEG:seg | : | : | : | : |
Description
Ubiquitin carboxyl-terminal hydrolase 12 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28400_001]
Coordinates
chr4:-:26812560..26831708
Molecular Weight (calculated)
131376.0 Da
IEP (calculated)
5.913
GRAVY (calculated)
-0.656
Length
1115 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTMMTPPPLD QEEEEMLVPH QELTEGPQPM EVTQTETATT PENQQVEDPP PFKFRWTIEN FSRLNIKKLY SDIFYVGGYK WRVLIFPKGN NVDHLSIYLD
0101: VADSTTLPYG WSRYAQFTLA IVNQIHSKYT IRKETQHQFN SRESDWGFTS FMSLSELYDP SRGYLVNDTC VIEAEVAVRR LIDYWSYDSK KETGYVGLKN
0201: QGATCYMNSL LQTLYHIPYF RKAVYHMPTT ENDMPSGSIP LALQSLFYKL QYSDNSVATK ELTKSFGWDT YDSFMQHDVQ ELNRVLCEKL EDKMKGTVVE
0301: GTIQYLFEGH HMNYIECINV DYKSMRKESF YDLQLDVKGC RDIYASFDKY VEVERLEGDN KYHAENHGLQ DAKKGVLFID FPPVLQLQLK RFEYDFMRDT
0401: MVKINDRYEF PLQLDLDKDN GKYLSPEADR RVRNLYTLHS VLVHSGGVHG GHYYAFIRPT LSDQWFKFDD ERVTKEDVKR ALEEQYGGEE ELSQTNPGFN
0501: NTPFKFTKYS NAYMLVYIRE SDKEKIMCNV DEKDIAEHLR VRLKREQEEK EHKKKEKAEA HLYTIIKVAR NEDLAEQIGR EIFFDLVDHD KVRTFRIQKQ
0601: LPFSHFKEEV AKEFNIPVQF QRFWLWAKRQ NHTYRPNRPL TPQEEAQSVG QLREVSNKAH NAELKLFLEV ELGLDLHPLP PPQKTKEDIL LFFKLYDPEK
0701: EGLRFVGRLF VKALGKPIEI LSKLNEMAGF PPNEDIELYE EIKFEPSVMC EHIDKQIPFR SSQLEDGDII CYQKASTLGN IDQYRYPDIP SFLEYVHNRQ
0801: VVHFRSLEKP KEDDFSLELS KLFTYDDVVE RVARQLGVDD PSKIRLTSHN CYSQQPKPQP IKYRGVEHLS DMLVHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHHATK DEVAVHSIRL PKNSTVADVI NDLKTKVELS HPDAELRLLE VFYHKIYKIF PLGEKIENIN DQYWTLRAEE IPEEEKNLSP HDRLIHVYHF
1001: TRDPNQNQMQ VQNFGEPFFL VIREGETLAD VKMHIQKKLQ VPDDEYSKWK FAFVSLGRPE YLQDLDVVSN RFQRRDIYGA WEQYLGLEHP DTAPKRAYTV
1101: NQNRHTFEKP VKIYN
0101: VADSTTLPYG WSRYAQFTLA IVNQIHSKYT IRKETQHQFN SRESDWGFTS FMSLSELYDP SRGYLVNDTC VIEAEVAVRR LIDYWSYDSK KETGYVGLKN
0201: QGATCYMNSL LQTLYHIPYF RKAVYHMPTT ENDMPSGSIP LALQSLFYKL QYSDNSVATK ELTKSFGWDT YDSFMQHDVQ ELNRVLCEKL EDKMKGTVVE
0301: GTIQYLFEGH HMNYIECINV DYKSMRKESF YDLQLDVKGC RDIYASFDKY VEVERLEGDN KYHAENHGLQ DAKKGVLFID FPPVLQLQLK RFEYDFMRDT
0401: MVKINDRYEF PLQLDLDKDN GKYLSPEADR RVRNLYTLHS VLVHSGGVHG GHYYAFIRPT LSDQWFKFDD ERVTKEDVKR ALEEQYGGEE ELSQTNPGFN
0501: NTPFKFTKYS NAYMLVYIRE SDKEKIMCNV DEKDIAEHLR VRLKREQEEK EHKKKEKAEA HLYTIIKVAR NEDLAEQIGR EIFFDLVDHD KVRTFRIQKQ
0601: LPFSHFKEEV AKEFNIPVQF QRFWLWAKRQ NHTYRPNRPL TPQEEAQSVG QLREVSNKAH NAELKLFLEV ELGLDLHPLP PPQKTKEDIL LFFKLYDPEK
0701: EGLRFVGRLF VKALGKPIEI LSKLNEMAGF PPNEDIELYE EIKFEPSVMC EHIDKQIPFR SSQLEDGDII CYQKASTLGN IDQYRYPDIP SFLEYVHNRQ
0801: VVHFRSLEKP KEDDFSLELS KLFTYDDVVE RVARQLGVDD PSKIRLTSHN CYSQQPKPQP IKYRGVEHLS DMLVHYNQTS DILYYEVLDI PLPELQGLKT
0901: LKVAFHHATK DEVAVHSIRL PKNSTVADVI NDLKTKVELS HPDAELRLLE VFYHKIYKIF PLGEKIENIN DQYWTLRAEE IPEEEKNLSP HDRLIHVYHF
1001: TRDPNQNQMQ VQNFGEPFFL VIREGETLAD VKMHIQKKLQ VPDDEYSKWK FAFVSLGRPE YLQDLDVVSN RFQRRDIYGA WEQYLGLEHP DTAPKRAYTV
1101: NQNRHTFEKP VKIYN
0001: MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN
Arabidopsis Description
UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.