Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G165800.1 | Wheat | unclear | 98.66 | 98.48 |
| Os12t0489100-01 | Rice | cytosol, extracellular, plasma membrane | 44.85 | 90.93 |
| Os12t0489200-01 | Rice | cytosol | 3.49 | 90.7 |
| HORVU4Hr1G034950.2 | Barley | cytosol | 90.06 | 89.98 |
| EES15989 | Sorghum | cytosol | 89.79 | 89.39 |
| EES09985 | Sorghum | cytosol | 89.44 | 89.36 |
| TraesCS5A01G105900.1 | Wheat | cytosol | 89.08 | 88.92 |
| GSMUA_Achr5P02720_001 | Banana | cytosol | 84.69 | 84.84 |
| Zm00001d041035_P002 | Maize | cytosol | 86.12 | 84.46 |
| GSMUA_Achr4P28400_001 | Banana | cytosol | 84.15 | 84.3 |
| VIT_13s0073g00610.t01 | Wine grape | cytosol | 84.06 | 84.22 |
| VIT_06s0009g00960.t01 | Wine grape | cytosol | 83.97 | 84.05 |
| GSMUA_Achr10P... | Banana | cytosol | 83.44 | 83.59 |
| Zm00001d023640_P004 | Maize | cytosol | 83.08 | 81.98 |
| GSMUA_Achr4P22710_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 83.17 | 80.71 |
| TraesCS2A01G246800.3 | Wheat | golgi | 80.04 | 79.89 |
| Solyc11g006320.1.1 | Tomato | cytosol | 79.32 | 79.32 |
| Solyc05g055090.2.1 | Tomato | cytosol | 78.42 | 78.28 |
| TraesCS3A01G295900.7 | Wheat | cytosol | 66.43 | 67.21 |
| Zm00001d052943_P023 | Maize | plastid | 76.99 | 64.23 |
| TraesCS3A01G176700.1 | Wheat | cytosol | 5.55 | 31.79 |
| TraesCS4A01G038800.2 | Wheat | mitochondrion, nucleus | 16.11 | 16.76 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 14.41 | 14.34 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 14.14 | 12.02 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 14.32 | 11.53 |
| TraesCS6A01G230500.1 | Wheat | nucleus, plastid | 16.03 | 10.8 |
Protein Annotations
| MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR028889 | InterPro:MATH/TRAF_dom |
| PFAM:PF00443 | PFAM:PF00917 | PFAM:PF12436 | PFAM:PF14533 | ScanProsite:PS00972 | ScanProsite:PS00973 |
| PFscan:PS50144 | PFscan:PS50235 | PANTHER:PTHR24006 | PANTHER:PTHR24006:SF577 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH |
| SMART:SM00061 | SUPFAM:SSF49599 | SUPFAM:SSF54001 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS4A01G163000 | EnsemblPlants:TraesCS4A01G163000.1 |
| InterPro:USP7_ICP0-binding_dom | InterPro:USP_C | InterPro:USP_CS | InterPro:USP_dom | TIGR:cd00121 | TIGR:cd02659 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:362065937..362113687
Molecular Weight (calculated)
130737.0 Da
IEP (calculated)
5.717
GRAVY (calculated)
-0.645
Length
1117 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTIMTPAPLE ENDEMLVPHQ ELATADADTA QPMEVVAQTE AASTAESQPS EDPQTSRFTW TIASFTRLNG KKHYSDVFAV GGYKWRVLIF PKGNNVEHLS
0101: MYLDVADSVN LPYGWSRSAQ FSLSVVNQID QKYTTRKDTQ HQFSARESDW GFTSFMPLSE LYDPSRGYLV NDTIVVEAEV AARKMVDYWT YDSKKETGYV
0201: GLKNQGATCY MNSLLQTLYH IPYFRKAVYH MPTTENDMPS GSIPLALQTL FYKLQYSDNS VATKELTKSF GWDTYDSFMQ HDVQELNRVL CEKLEDKMKG
0301: TVVEGTIEQL FEGHHINYIE CINVDYKSNR KESFYDLQLD VKGCRDVYAS FDKYVEVERL EGDNKYHAEN HGLQDAKKGV LFLDFPPVLQ LQLKRFEYDY
0401: MRDTMVKIND RYEFPLQLDL DRDDGKYLAP DADRSIRNLY TLHSVLVHSG GVHGGHYYAF IRPTLADQWY KFDDERVTKE DTKKAFEEQY GGEEELPQIN
0501: PGFNNTPFKF TKYSNAYMLV YIRESDKEKI MCNVDEKDIA EHLRIRLKKE QEEKEHKKKE KAEAHLYTII KIARDEDLKE QTGKDIYFDL VDHEKVRSFR
0601: IQKQLPFSTF KEEVAKEYGI PVQFQRFWLW AKRQNHTYRP NRPLNPHEET QSVGQLREIS NKAQNAELKL FLEVEFGLDL QPLPPPEKSK EDILLFFKLY
0701: NPEKEVLCFV GRFFVKALGK PSDILRKLTE MAGFTPDEEI ELYEEIKFEP NVMCEHIDKK LTFRASQLED GDIVCFQKSP KADSGTQVRY PDVPLFLEYV
0801: HNRQVVHFRS LEKPKDDEFC LELSKLHTYD DVVERVAHQL GLDDPAKIRL TSHNCYSQQP KPQPIRYQGV EHLLDMLVHY NQTSDILYYE VLDIPLPELQ
0901: FLKTLKVAFH HATKEEVVIH SIRLPKNSTI ADVIIDLKTK VDLSSPTAEL RVLEVFYHKI YKIFPLHEKI ENINDQYWTL RAEEVPEEEK NPSQNDRLIH
1001: VYHFAKDSLQ NQIQNFGDPF FLAIREGETL AEVKSRIQRK LQVPDEEFSK WKFAFISMNR PDYLQDSDVV SARFQRRDVY GAWEQYLGLE HTDTAPKRAY
1101: TANQNRHTHE KPVRIYN
0101: MYLDVADSVN LPYGWSRSAQ FSLSVVNQID QKYTTRKDTQ HQFSARESDW GFTSFMPLSE LYDPSRGYLV NDTIVVEAEV AARKMVDYWT YDSKKETGYV
0201: GLKNQGATCY MNSLLQTLYH IPYFRKAVYH MPTTENDMPS GSIPLALQTL FYKLQYSDNS VATKELTKSF GWDTYDSFMQ HDVQELNRVL CEKLEDKMKG
0301: TVVEGTIEQL FEGHHINYIE CINVDYKSNR KESFYDLQLD VKGCRDVYAS FDKYVEVERL EGDNKYHAEN HGLQDAKKGV LFLDFPPVLQ LQLKRFEYDY
0401: MRDTMVKIND RYEFPLQLDL DRDDGKYLAP DADRSIRNLY TLHSVLVHSG GVHGGHYYAF IRPTLADQWY KFDDERVTKE DTKKAFEEQY GGEEELPQIN
0501: PGFNNTPFKF TKYSNAYMLV YIRESDKEKI MCNVDEKDIA EHLRIRLKKE QEEKEHKKKE KAEAHLYTII KIARDEDLKE QTGKDIYFDL VDHEKVRSFR
0601: IQKQLPFSTF KEEVAKEYGI PVQFQRFWLW AKRQNHTYRP NRPLNPHEET QSVGQLREIS NKAQNAELKL FLEVEFGLDL QPLPPPEKSK EDILLFFKLY
0701: NPEKEVLCFV GRFFVKALGK PSDILRKLTE MAGFTPDEEI ELYEEIKFEP NVMCEHIDKK LTFRASQLED GDIVCFQKSP KADSGTQVRY PDVPLFLEYV
0801: HNRQVVHFRS LEKPKDDEFC LELSKLHTYD DVVERVAHQL GLDDPAKIRL TSHNCYSQQP KPQPIRYQGV EHLLDMLVHY NQTSDILYYE VLDIPLPELQ
0901: FLKTLKVAFH HATKEEVVIH SIRLPKNSTI ADVIIDLKTK VDLSSPTAEL RVLEVFYHKI YKIFPLHEKI ENINDQYWTL RAEEVPEEEK NPSQNDRLIH
1001: VYHFAKDSLQ NQIQNFGDPF FLAIREGETL AEVKSRIQRK LQVPDEEFSK WKFAFISMNR PDYLQDSDVV SARFQRRDVY GAWEQYLGLE HTDTAPKRAY
1101: TANQNRHTHE KPVRIYN
0001: MTMMTPPPVD PEDEEMLVPN SDLVDGPAQP MEVTQPETAA STVENQPAED PPTLKFTWTI PNFSRQNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN
0101: LDVSDAASLP YGWSRYAQFS LAVVNQIHTR YTVRKETQHQ FNARESDWGF TSFMPLSELY DPSRGYLVND TVLVEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQQLFE GHHMNYIECI NVDFKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHG LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLELDLDR EDGKYLSPDA DRSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDL KRALEEQYGG EEELPQTNPG
0501: FNNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRRYK AQAHLYTIIK VARDEDLKEQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGVP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVEHLDLRP IPPPEKSKED ILLFFKLYDP
0701: EKAVLSYAGR LMVKSSSKPM DITGKLNEMV GFAPDEEIEL FEEIKFEPCV MCEHLDKKTS FRLCQIEDGD IICFQKPLVN KEIECLYPAV PSFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKQHTYDDVV EKVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEEVVIHNIR LPKQSTVGDV INELKTKVEL SHPDAELRLL EVFYHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLILVYH
1001: FAKETGQNQQ VQNFGEPFFL VIHEGETLEE IKNRIQKKLH VSDEDFAKWK FAFMSMGRPE YLQDTDVVYN RFQRRDVYGA FEQYLGLEHA DTTPKRAYAA
1101: NQNRHAYEKP VKIYN
Arabidopsis Description
UBP12Ubiquitin carboxyl-terminal hydrolase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPT1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.