Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0489100-01 | Rice | cytosol, extracellular, plasma membrane | 34.58 | 84.03 |
| EES09985 | Sorghum | cytosol | 69.38 | 83.09 |
| TraesCS4D01G165800.1 | Wheat | unclear | 64.38 | 77.03 |
| TraesCS4A01G163000.1 | Wheat | cytosol | 64.23 | 76.99 |
| TraesCS5A01G105900.1 | Wheat | cytosol | 63.7 | 76.23 |
| HORVU5Hr1G031980.4 | Barley | cytosol | 63.63 | 76.07 |
| TraesCS5B01G111000.7 | Wheat | cytosol | 64.0 | 76.04 |
| TraesCS5D01G123300.4 | Wheat | cytosol | 63.85 | 75.87 |
| GSMUA_Achr4P28400_001 | Banana | cytosol | 61.91 | 74.35 |
| GSMUA_Achr5P02720_001 | Banana | cytosol | 61.84 | 74.26 |
| GSMUA_Achr10P... | Banana | cytosol | 60.94 | 73.18 |
| VIT_13s0073g00610.t01 | Wine grape | cytosol | 60.94 | 73.18 |
| VIT_06s0009g00960.t01 | Wine grape | cytosol | 60.72 | 72.85 |
| Zm00001d041035_P002 | Maize | cytosol | 61.39 | 72.17 |
| HORVU4Hr1G034950.2 | Barley | cytosol | 59.67 | 71.47 |
| Zm00001d023640_P004 | Maize | cytosol | 60.27 | 71.29 |
| GSMUA_Achr4P22710_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.94 | 70.89 |
| Solyc11g006320.1.1 | Tomato | cytosol | 58.18 | 69.74 |
| Solyc05g055090.2.1 | Tomato | cytosol | 57.21 | 68.45 |
| Zm00001d007904_P003 | Maize | cytosol | 57.13 | 65.89 |
| Zm00001d018859_P010 | Maize | cytosol | 54.59 | 65.09 |
| Os12t0489200-01 | Rice | cytosol | 2.02 | 62.79 |
| Zm00001d043312_P001 | Maize | nucleus | 48.39 | 58.01 |
| Zm00001d030958_P001 | Maize | nucleus | 7.02 | 20.61 |
| Zm00001d028177_P004 | Maize | cytosol | 10.9 | 13.61 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 11.05 | 13.59 |
| Zm00001d041395_P002 | Maize | nucleus | 10.6 | 12.78 |
| Zm00001d030960_P003 | Maize | nucleus | 10.68 | 12.72 |
| Zm00001d043294_P006 | Maize | nucleus | 11.13 | 11.64 |
| Zm00001d038655_P003 | Maize | nucleus | 10.53 | 10.85 |
| Zm00001d034390_P001 | Maize | nucleus | 2.02 | 10.47 |
| Zm00001d010716_P002 | Maize | nucleus | 9.04 | 9.19 |
| Zm00001d051075_P002 | Maize | nucleus | 10.9 | 8.62 |
Protein Annotations
| EntrezGene:100381748 | MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 |
| UniProt:A0A1D6QL28 | ProteinID:AQK58413.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR002083 |
| InterPro:IPR008974 | InterPro:IPR028889 | InterPro:MATH/TRAF_dom | PFAM:PF00443 | PFAM:PF00917 | PFAM:PF12436 |
| PFAM:PF14533 | ScanProsite:PS00972 | PFscan:PS50144 | PFscan:PS50235 | PANTHER:PTHR24006 | PANTHER:PTHR24006:SF577 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SMART:SM00061 | SUPFAM:SSF49599 | SUPFAM:SSF54001 | InterPro:TRAF-like |
| UniParc:UPI000844098B | InterPro:USP7_ICP0-binding_dom | InterPro:USP_C | InterPro:USP_CS | InterPro:USP_dom | EnsemblPlantsGene:Zm00001d052943 |
| EnsemblPlants:Zm00001d052943_P023 | EnsemblPlants:Zm00001d052943_T023 | SEG:seg | : | : | : |
Description
Ubiquitin carboxyl-terminal hydrolase 13
Coordinates
chr4:+:205690425..205738686
Molecular Weight (calculated)
153887.0 Da
IEP (calculated)
5.468
GRAVY (calculated)
-0.550
Length
1339 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVTPPTVEVR RHSRVVHSFP SSPLPHAPSP RPYSSVASHP AIHRSEWRLS SSSLGFIGSD PSPRCPTRSQ QEDEEMLVPR QEAVDTDAAQ PMEVVAQTEV
0101: VSTAESQPVE DPQTSRFTWT IENFTRFSEK KHYLEVFVVG GFKWSVLIFP KGNNVDHFSM YLDVADSTSL PYGWSRYAQF SLAVVNQIQP EFTIRKETQH
0201: QFNARESDWG FTSFMPLSEL YDASRGYLVN DTVVVEAEVA VRRIVDYWTY DSKKETGYVG LKNQGATCYM NSLLQTLYHI PYFRKVWYYH AFLHYRHYLY
0301: CTSLIYFFCF KAVYHMPTTE NDIPSGSIPL ALQSLFYKLQ YSDSSVATKE LTKSFGWDTY DSFMQHDVQE LNRVLSEKLE DKMKGTVVEG TIEQLFEGHH
0401: INYIECINVE HKSNRKESFY DLQLDVKGCR DIYSSFDKYV EVERLEGDNK YHAENHGLQD AKKGVLFLDF PPVLQLQLKR FEYDYMRDSM VKINDRYEFP
0501: LQLDLDRDGG KYIAPNADRM FLFIVVGYMV VTTMHSYGQL YLSNVPRPGP HRKLGVERFI GEYKFDDERV TKEDAKKALE EQYGGDEELP QINPGFNNAP
0601: FKFTKYSNAY MLVYIRESAK EKIMCTVDEK DIAEHLRVRL KKEQEEKEHK KKEKAEAHLY TIIKVARDED LKEQIGKGIY FDLVDHEKVH NFRIQKQMPF
0701: SCFKEEVAKE YGIPVQFQRF WLWAKRQNHT YRPNRPLTVH EETQSVGQLR EISNKAHNVE LKLFLEVELG LDLRPLPPPE KGKEDILLFF KFYNPEKEEL
0801: CNLWLLQVVH FRSLEKPKDD DFSLELSKLH TYDDVVERVA RQLELDDPAK IRLTPHNCYS QQPKPQPVKY RGVVHLSDML IHYNQRHLVQ TSDILYYEVL
0901: DIPLPELQFL KTLKVAFHHP TKDEVVIHSI RLPKNSTIAD VIYDLKTKVE LSSPNAELRV LEVFYHKIYK IFPLHEKIEN INDQYWTLRA EEIPEEEKNI
1001: GPNDRLIHVY HFKKDINQTQ QIQNFGDPFV LVVHEGETLA EVKKRIQSKL QVSADEFSKW KFAFISMNRP DYLQDSDVVP TGFQRREVYG AWEQYLGIEH
1101: ADTAPKRVYT VNQFHHSHSI MQQRPSSPTV AGGGAVGGGE DPLDSTVIPP EYLRWLLDDG KGLSYCATAA AEAASPRLRA AAPTSFHSPM QRQASSPSCP
1201: AAGGGDEYPF DDDIVITPDL LRGLDDDDGT GGCVRGAAER TGAEAEDERR QSEAEVGDRS PTQQPPPPSP SCAVAGEGAG GDEDPFDDDI AIPMDYLLEL
1301: LDGDASLDGE AEAETETILT LLSAACEQSA KPKLTNLVK
0101: VSTAESQPVE DPQTSRFTWT IENFTRFSEK KHYLEVFVVG GFKWSVLIFP KGNNVDHFSM YLDVADSTSL PYGWSRYAQF SLAVVNQIQP EFTIRKETQH
0201: QFNARESDWG FTSFMPLSEL YDASRGYLVN DTVVVEAEVA VRRIVDYWTY DSKKETGYVG LKNQGATCYM NSLLQTLYHI PYFRKVWYYH AFLHYRHYLY
0301: CTSLIYFFCF KAVYHMPTTE NDIPSGSIPL ALQSLFYKLQ YSDSSVATKE LTKSFGWDTY DSFMQHDVQE LNRVLSEKLE DKMKGTVVEG TIEQLFEGHH
0401: INYIECINVE HKSNRKESFY DLQLDVKGCR DIYSSFDKYV EVERLEGDNK YHAENHGLQD AKKGVLFLDF PPVLQLQLKR FEYDYMRDSM VKINDRYEFP
0501: LQLDLDRDGG KYIAPNADRM FLFIVVGYMV VTTMHSYGQL YLSNVPRPGP HRKLGVERFI GEYKFDDERV TKEDAKKALE EQYGGDEELP QINPGFNNAP
0601: FKFTKYSNAY MLVYIRESAK EKIMCTVDEK DIAEHLRVRL KKEQEEKEHK KKEKAEAHLY TIIKVARDED LKEQIGKGIY FDLVDHEKVH NFRIQKQMPF
0701: SCFKEEVAKE YGIPVQFQRF WLWAKRQNHT YRPNRPLTVH EETQSVGQLR EISNKAHNVE LKLFLEVELG LDLRPLPPPE KGKEDILLFF KFYNPEKEEL
0801: CNLWLLQVVH FRSLEKPKDD DFSLELSKLH TYDDVVERVA RQLELDDPAK IRLTPHNCYS QQPKPQPVKY RGVVHLSDML IHYNQRHLVQ TSDILYYEVL
0901: DIPLPELQFL KTLKVAFHHP TKDEVVIHSI RLPKNSTIAD VIYDLKTKVE LSSPNAELRV LEVFYHKIYK IFPLHEKIEN INDQYWTLRA EEIPEEEKNI
1001: GPNDRLIHVY HFKKDINQTQ QIQNFGDPFV LVVHEGETLA EVKKRIQSKL QVSADEFSKW KFAFISMNRP DYLQDSDVVP TGFQRREVYG AWEQYLGIEH
1101: ADTAPKRVYT VNQFHHSHSI MQQRPSSPTV AGGGAVGGGE DPLDSTVIPP EYLRWLLDDG KGLSYCATAA AEAASPRLRA AAPTSFHSPM QRQASSPSCP
1201: AAGGGDEYPF DDDIVITPDL LRGLDDDDGT GGCVRGAAER TGAEAEDERR QSEAEVGDRS PTQQPPPPSP SCAVAGEGAG GDEDPFDDDI AIPMDYLLEL
1301: LDGDASLDGE AEAETETILT LLSAACEQSA KPKLTNLVK
0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN
Arabidopsis Description
UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.