Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034390_P001 | Maize | nucleus | 17.48 | 89.15 |
| Zm00001d038655_P003 | Maize | nucleus | 82.14 | 83.15 |
| Os05t0508700-01 | Rice | nucleus | 37.61 | 64.2 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 63.45 | 60.25 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 63.07 | 59.8 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 62.61 | 59.37 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 61.7 | 56.47 |
| Zm00001d030958_P001 | Maize | nucleus | 17.71 | 51.1 |
| Zm00001d043294_P006 | Maize | nucleus | 45.52 | 46.8 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 31.46 | 38.48 |
| Zm00001d030960_P003 | Maize | nucleus | 31.99 | 37.46 |
| Zm00001d041395_P002 | Maize | nucleus | 30.85 | 36.54 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 32.75 | 30.52 |
| Zm00001d023640_P004 | Maize | cytosol | 10.49 | 12.19 |
| Zm00001d041035_P002 | Maize | cytosol | 10.49 | 12.12 |
| Zm00001d018859_P010 | Maize | cytosol | 9.42 | 11.04 |
| Zm00001d043312_P001 | Maize | nucleus | 9.27 | 10.92 |
| Zm00001d007904_P003 | Maize | cytosol | 9.42 | 10.68 |
| Zm00001d052943_P023 | Maize | plastid | 9.19 | 9.04 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 5.47 | 6.61 |
| Zm00001d028177_P004 | Maize | cytosol | 5.24 | 6.43 |
| Zm00001d051075_P002 | Maize | nucleus | 7.67 | 5.97 |
Protein Annotations
| EntrezGene:100383243 | Gene3D:2.60.210.10 | MapMan:22.5.1.6 | UniProt:A0A1D6FSY9 | ProteinID:AQK94690.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR45001 |
| SUPFAM:SSF49599 | TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI00084364C0 | EnsemblPlantsGene:Zm00001d010716 | EnsemblPlants:Zm00001d010716_P002 |
| EnsemblPlants:Zm00001d010716_T002 | SEG:seg | : | : | : | : |
Description
TRAF-like superfamily protein
Coordinates
chr8:-:125524909..125538426
Molecular Weight (calculated)
145551.0 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.661
Length
1316 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGSAVTDDS AASTTGMRDD ERSLSGESFS EWRSCERADS DTPSTSPPFW DSDGDDDDPA GWEEDEKVQM ETWKKGDGGP KPSELFGRYT WRIENFSKEK
0101: KREMKSIFLY ILKDVMSLII FHYSFALLIM TNFSQVPTII ILTLSSGINH VSFVDTLHRF WKKEHDWGWK KFMELSKIQD GFLVDDVLEI IAQVQVIREK
0201: VDRPFRCLDR PYRRELIRIY MTNVEQIYRR FIEERRSKLS KLIEDKIKWS SFRAFWSAID PNTRHRMSRE KTDTILKMLV KQFFVEKEVT STLVMDSLYT
0301: SLKALEYQMK GRKGKTKLAD LEELPAPMVH VDMDMFILAD DVIALLERAA LEPLPCQPLA PKDDKTSQPR MKVSTFLALE PRINYVRTIF LLVSHAYLQD
0401: GSSGEVYNVS MEREERRLTE LGQKILETFV LSHIFSGIEV AYQEAVALKR QEELIREEEE EAGLLEHQMK GKRGGGVNEK DKRAKKKQTK QKKNRKAKDK
0501: ERDEKCEVKI LERLRDETAI DNSDGLPSQV EVIAKIDALE EGSSDGSDMS NRGKNQRNKG LSIISFAEEG DGLPSTSNVT GGLGRNSSGC CTAPKLDQDT
0601: VLLTLRDRLR KLGQRLHEKN IEGQKLLKKH FEARDAKAKE EPSDSSNSLD KPPDVPEIPV HSSEDTVDLK VNGTPKKDAS VVNPVLEDSV SGIPVTANNE
0701: PVPSPTTTKM DPVSNKVNGS SLKMKVTMAS PCSKSHPADM DKDASLPSKS PRTNRAAPVP PKLPSADKAT LVPSKLPSVD KATPVPQKSP LVNKVAQARP
0801: KSPAVDKATP HRPKSPAVDK ATPVRSQSPA VDKATLVRPQ SPAVDKATPV RPQSAAVDKA TPVRPKSPAI DKATPIAPKS PPVDKASPAL PKSLSGAKDA
0901: LFPSRSLQID KFTPAAPRLS QDDKAALPSS EQSHISPATS SEAQGATTRK VTTTTSLSEA AAAWRPSSAP VLPTPRSTGP AASHIQTSTL LSRSMSEAAG
1001: RRPVNDPSFS APSYTPQTYR NAIIGKSGLS MTSASLAYQP SSLDQDTAPS RPLSAYASST VMMPPAGRSD QSSARHGFKS GPGKLEAHDG WQQWKGDSNV
1101: DMHLWRDHAP YQQMTNSQAY EQSRRDDTYQ QACSRGTEKF SRHAGLQARQ QFQTETPASH VWHQPQGPVA EEFPHLDIIN DLLEEDQING SIPESFRQDY
1201: NVFGLPFSPR GNLSDMEMAS VRSPARFNSP KYDGGLSGAY DMNAVNGLRE RQFPSLDIYS NGLSDVSASK PWLNGSASPS VSLGVNTNGY HPQVGEYLGG
1301: GVNGVSLWRR HANGRW
0101: KREMKSIFLY ILKDVMSLII FHYSFALLIM TNFSQVPTII ILTLSSGINH VSFVDTLHRF WKKEHDWGWK KFMELSKIQD GFLVDDVLEI IAQVQVIREK
0201: VDRPFRCLDR PYRRELIRIY MTNVEQIYRR FIEERRSKLS KLIEDKIKWS SFRAFWSAID PNTRHRMSRE KTDTILKMLV KQFFVEKEVT STLVMDSLYT
0301: SLKALEYQMK GRKGKTKLAD LEELPAPMVH VDMDMFILAD DVIALLERAA LEPLPCQPLA PKDDKTSQPR MKVSTFLALE PRINYVRTIF LLVSHAYLQD
0401: GSSGEVYNVS MEREERRLTE LGQKILETFV LSHIFSGIEV AYQEAVALKR QEELIREEEE EAGLLEHQMK GKRGGGVNEK DKRAKKKQTK QKKNRKAKDK
0501: ERDEKCEVKI LERLRDETAI DNSDGLPSQV EVIAKIDALE EGSSDGSDMS NRGKNQRNKG LSIISFAEEG DGLPSTSNVT GGLGRNSSGC CTAPKLDQDT
0601: VLLTLRDRLR KLGQRLHEKN IEGQKLLKKH FEARDAKAKE EPSDSSNSLD KPPDVPEIPV HSSEDTVDLK VNGTPKKDAS VVNPVLEDSV SGIPVTANNE
0701: PVPSPTTTKM DPVSNKVNGS SLKMKVTMAS PCSKSHPADM DKDASLPSKS PRTNRAAPVP PKLPSADKAT LVPSKLPSVD KATPVPQKSP LVNKVAQARP
0801: KSPAVDKATP HRPKSPAVDK ATPVRSQSPA VDKATLVRPQ SPAVDKATPV RPQSAAVDKA TPVRPKSPAI DKATPIAPKS PPVDKASPAL PKSLSGAKDA
0901: LFPSRSLQID KFTPAAPRLS QDDKAALPSS EQSHISPATS SEAQGATTRK VTTTTSLSEA AAAWRPSSAP VLPTPRSTGP AASHIQTSTL LSRSMSEAAG
1001: RRPVNDPSFS APSYTPQTYR NAIIGKSGLS MTSASLAYQP SSLDQDTAPS RPLSAYASST VMMPPAGRSD QSSARHGFKS GPGKLEAHDG WQQWKGDSNV
1101: DMHLWRDHAP YQQMTNSQAY EQSRRDDTYQ QACSRGTEKF SRHAGLQARQ QFQTETPASH VWHQPQGPVA EEFPHLDIIN DLLEEDQING SIPESFRQDY
1201: NVFGLPFSPR GNLSDMEMAS VRSPARFNSP KYDGGLSGAY DMNAVNGLRE RQFPSLDIYS NGLSDVSASK PWLNGSASPS VSLGVNTNGY HPQVGEYLGG
1301: GVNGVSLWRR HANGRW
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.