Factsheet for Zm00001d043312_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33467	Sorghum	nucleus	91.41	91.32
HORVU3Hr1G075250.1	Barley	cytosol	26.77	81.25
KRH33457	Soybean	cytosol	10.56	80.82
KRH17929	Soybean	cytosol	30.17	76.07
TraesCS3A01G295900.7	Wheat	cytosol	73.41	74.28
TraesCS3D01G307100.1	Wheat	cytosol	73.41	74.28
TraesCS3B01G341000.1	Wheat	cytosol	73.14	74.0
KRG89898	Soybean	cytosol	24.71	73.02
Os01t0771400-00	Rice	plasma membrane	64.55	70.69
KRH73403	Soybean	nucleus	69.47	69.41
HORVU3Hr1G075220.5	Barley	endoplasmic reticulum	47.63	69.18
KRH14719	Soybean	nucleus	69.2	69.14
KRG89895	Soybean	nucleus	44.05	65.69
Zm00001d018859_P010	Maize	cytosol	64.1	63.76
Zm00001d041035_P002	Maize	cytosol	64.64	63.39
Zm00001d007904_P003	Maize	cytosol	65.8	63.31
KRH17931	Soybean	mitochondrion, nucleus	37.87	62.48
Zm00001d023640_P004	Maize	cytosol	63.03	62.19
Zm00001d052943_P023	Maize	plastid	58.01	48.39
Zm00001d030958_P001	Maize	nucleus	8.59	21.05
Zm00001d028177_P004	Maize	cytosol	14.77	15.38
Zm00001d020157_P011	Maize	cytosol, mitochondrion, nucleus	14.77	15.15
Zm00001d041395_P002	Maize	nucleus	13.16	13.23
Zm00001d030960_P003	Maize	nucleus	12.98	12.9
Zm00001d043294_P006	Maize	nucleus	13.88	12.11
Zm00001d038655_P003	Maize	nucleus	12.62	10.85
Zm00001d010716_P002	Maize	nucleus	10.92	9.27
Zm00001d051075_P002	Maize	nucleus	13.97	9.21
Zm00001d034390_P001	Maize	nucleus	1.52	6.59

Protein Annotations

MapMan:14.6.2.3	MapMan:19.2.3.1.1.5	Gene3D:2.60.210.10	Gene3D:3.10.20.90	Gene3D:3.90.70.10	UniProt:A0A1D6NAF8
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR002083	InterPro:IPR008974	InterPro:IPR028889	InterPro:MATH/TRAF_dom
ProteinID:ONM37534.1	PFAM:PF00443	PFAM:PF00917	PFAM:PF12436	PFAM:PF14533	ScanProsite:PS00972
ScanProsite:PS00973	PFscan:PS50144	PFscan:PS50235	PANTHER:PTHR24006	PANTHER:PTHR24006:SF565	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SMART:SM00061	SUPFAM:SSF49599	SUPFAM:SSF54001	InterPro:TRAF-like	UniParc:UPI0008425C8B
InterPro:USP7_ICP0-binding_dom	InterPro:USP_C	InterPro:USP_CS	InterPro:USP_dom	EnsemblPlantsGene:Zm00001d043312	EnsemblPlants:Zm00001d043312_P001
EnsemblPlants:Zm00001d043312_T001	SEG:seg	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 13

Coordinates

chr3:+:196046162..196077538

Molecular Weight (calculated)

130849.0 Da

IEP (calculated)

5.974

GRAVY (calculated)

-0.651

Length

1117 amino acids

Sequence
(BLAST)

0001: MVVPRAPEQT QQDQDEEMLV PHQDAIEGLQ KDVLEGPQPM EEFASAVENQ IIPDTSTSRF TWYIENFSKR NVRKHYSDDF TVGGYKWRVL VFPRGNNVDY
0101: LSMYLDVADS NLMPPGWSRN AQFSLAVVNQ LDSKASLRKE ATHQFNSRES DWGFTSFMPL LDLYDSSKGY VVNDKCIIEA EVAVRKTLDF WNYDSKRMTG
0201: YVGLKNQGAT CYMNSLLQTL YHIPYFRKAV YHMPTTENDT PSGNIPLALQ SLFYKLQHSD NSVATKELTK SFGWDSYDSF MQHDVQELNR VLCEKLENKM
0301: KGTTVEGAIQ KLFEGHHMNY IECINVESKS TRKESFYDLA LDVKGCSDVY ASFDKYVAVE RLEGDNKYQS EEHGLQDAKK GMLFIDFPPV LQLQLKRFEY
0401: DFVRDTMLKI NDRYEFPLQL DLDRDDGKYL SPDADRSVRN LYTLHSVLVH SGGVHGGHYY AFIRPKLSDQ WYKFEDERVT KEDMKRALEE QYGGEEELPH
0501: TNPGLDTAPL RFTKHSNAYM LVYIRESDKD NIICDLDDED ISEHLKVRLR KEHEEKEYKK KEKAEAHMFT ALKVARDFDI KEQIGRHMHF DLVDFDRVNS
0601: FRAPKNMSIN EVKEELSKEF GIPVECQRFW VWAKRQNCTY RPSRPLTSQE ETSTIGVLKD ATVAKLPNSE VRLFLEVHFR QENQPIAPWN TKEDILLFFK
0701: LYDPEKEDLR YVGNFFVKAS GKPSDIVERL NQIAGFLSDE DIELYEEIKF EPVVMCVPIE SNASFRSSQI DNGDIICYQK HCLPDSMDRY RYPTVPSFFE
0801: YIHNRQIVHF RLLEKPKEEG FSLELSKCST YDDVVEKVAK QLRMDDPSKI RLTQHNPSSQ QPKPHFIKYR SLNYLSDMLH NHNQMCDILY YDILDIPLPE
0901: LESMRSLKVA FQNAANHEMS FHIMRLPKSN SLLDLIEDLK SKVEISCNDA EFRFFGVYLH KICKVYQPGD KIDSVNDHGP LYIEEVPEDE KNAGPHDRLV
1001: HVYHFEYNHH IQYFGEPFFF LIRDGEALSD MKVRIQKRLQ VPDEQFLKWK FAHVTFSKPE YLQDSDIVMN RFHKQRPVYG GWEQHLGLEH TATTPKRSYL
1101: GNNQNRHSFE KPVRIYN

Best Arabidopsis Sequence Match ( AT3G11910.1 )
(BLAST)

0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN

Arabidopsis Description

UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.