Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038655_P003 | Maize | nucleus | 96.9 | 19.23 |
| Zm00001d010716_P002 | Maize | nucleus | 89.15 | 17.48 |
| Zm00001d043294_P006 | Maize | nucleus | 44.96 | 9.06 |
| Zm00001d030960_P003 | Maize | nucleus | 25.19 | 5.78 |
| Zm00001d041395_P002 | Maize | nucleus | 23.26 | 5.4 |
| CDX94711 | Canola | nucleus | 16.67 | 4.47 |
| CDY22344 | Canola | nucleus | 14.34 | 3.99 |
| Zm00001d023640_P004 | Maize | cytosol | 10.08 | 2.3 |
| Zm00001d041035_P002 | Maize | cytosol | 10.08 | 2.28 |
| Zm00001d007904_P003 | Maize | cytosol | 10.08 | 2.24 |
| Zm00001d018859_P010 | Maize | cytosol | 9.3 | 2.14 |
| Zm00001d052943_P023 | Maize | plastid | 10.47 | 2.02 |
| Zm00001d020157_P011 | Maize | cytosol, mitochondrion, nucleus | 6.59 | 1.56 |
| Zm00001d043312_P001 | Maize | nucleus | 6.59 | 1.52 |
| Zm00001d028177_P004 | Maize | cytosol | 6.2 | 1.49 |
| Zm00001d051075_P002 | Maize | nucleus | 3.88 | 0.59 |
| AT4G16045.1 | Thale cress | cytosol | 0.78 | 0.52 |
| Zm00001d030958_P001 | Maize | nucleus | 0.0 | 0.0 |
| CDY26906 | Canola | cytosol | 0.0 | 0.0 |
| CDY01264 | Canola | cytosol | 0.0 | 0.0 |
| CDY01258 | Canola | cytosol | 0.0 | 0.0 |
| CDX93823 | Canola | cytosol | 0.0 | 0.0 |
| CDX73257 | Canola | cytosol | 0.0 | 0.0 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d034390_P001 | EnsemblPlants:Zm00001d034390_T001 | EnsemblPlantsGene:Zm00001d034390 | PANTHER:PTHR45001 | ProteinID:ONM10129.1 | UniParc:UPI0002216C12 |
| UniProt:A0A1D6L795 | MapMan:35.2 | : | : | : | : |
Description
TRAF-like superfamily protein
Coordinates
chr1:-:291769708..291770484
Molecular Weight (calculated)
28761.8 Da
IEP (calculated)
6.026
GRAVY (calculated)
-0.900
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEAAGRRSV NDPSFSDPSY TPQTYRNAII GKTGLATTSA SLAYQSYSLG QDTAPSQPLS AYASSTTVMM PPAGRSDQSS ARHGFKPGSG KLEAHDSWQQ
101: WKGDNNVEMH LWRDHTPYQQ MTRSQAYDQS RRDDTYQQTC SRGTEKFSRH AGLQARQFQT ETPASHVWHQ QQGQVAEEFP HLDIINDLLE EDQINGSIPE
201: SFHQDYNVFG LPFSPRGNLS DMGMASVRSP ARFNSTKYEY DGGFSGAYDI NAVNGLRE
101: WKGDNNVEMH LWRDHTPYQQ MTRSQAYDQS RRDDTYQQTC SRGTEKFSRH AGLQARQFQT ETPASHVWHQ QQGQVAEEFP HLDIINDLLE EDQINGSIPE
201: SFHQDYNVFG LPFSPRGNLS DMGMASVRSP ARFNSTKYEY DGGFSGAYDI NAVNGLRE
001: MDQNSRRRMC REKVDVILKG VVKHFFVEKE VSSTLVMDSL YSGLKALEGQ TKNMKARSRL LDAKQLPAPI VSVDKDMFVL VDDVLLLLER AALEPLPPKD
101: EKGRQNRTKD GNDGEEVNKE ADERDERRLT ELGRRTVEIF ILSHIFSTKI EVAHQEAIAL KRQEELIREE EEAWLAETEQ RAKRGAAERE KKSKKKQAKQ
201: KRNKNKGKDK RKEEKVSFAT HAKDLEENQN QNQNDEEEKD SVTEKAQSSA EKPDTLGDVS DISDSVDGSA DILQPDLEDR DSSSVLWDTD ALEIHPPSSE
301: GSSRGRGISI STPNGITEGK SHSTMDDSSS TCSNDSIRSG VTNGSYQGNS LNFRNQKSPN KGKNQQVKAM TDAHSLASET DDQPSTLGTD PKGQNYSSEA
401: SNVGESDWVV VSHIQEPEGS RNRIPVGRER KTVQSIVNSV DMDRPKEKST AVLSSPRNVA KNPSPLTQTK PEKKSISTAD GIPNRKVLAT GPPSSSQVVL
501: PSDIQSQTVG LRADMQKLSA PKQPPATTIS RPSSAPIIPA MRPSPITVSS SVQTTTSLPR SVSSAGRLGP DPSLHNQQTY TPQSYKNAIV GNSLGSSSSS
601: FNHHPSSHGV VPTTLPSSSY SQAPTSSYQS SFPYSQDGLL WTGRSPSSVN MGMYNNTYSP AVTSNRSLNH MDVQIAQQQA QSMMTDEFPH LDIINDLLED
701: EQCSNMVYNG SIFNPQPQVF NGQYSSYHGE LLSGGRTRSF GEEGLHYMAR GPYGTDGMMP RQWQMTNMDL SLPAMRSNGM EDGTSSAANY HHSYFGLDAS
801: NPSFTSGING YTEFRPSNGH
101: EKGRQNRTKD GNDGEEVNKE ADERDERRLT ELGRRTVEIF ILSHIFSTKI EVAHQEAIAL KRQEELIREE EEAWLAETEQ RAKRGAAERE KKSKKKQAKQ
201: KRNKNKGKDK RKEEKVSFAT HAKDLEENQN QNQNDEEEKD SVTEKAQSSA EKPDTLGDVS DISDSVDGSA DILQPDLEDR DSSSVLWDTD ALEIHPPSSE
301: GSSRGRGISI STPNGITEGK SHSTMDDSSS TCSNDSIRSG VTNGSYQGNS LNFRNQKSPN KGKNQQVKAM TDAHSLASET DDQPSTLGTD PKGQNYSSEA
401: SNVGESDWVV VSHIQEPEGS RNRIPVGRER KTVQSIVNSV DMDRPKEKST AVLSSPRNVA KNPSPLTQTK PEKKSISTAD GIPNRKVLAT GPPSSSQVVL
501: PSDIQSQTVG LRADMQKLSA PKQPPATTIS RPSSAPIIPA MRPSPITVSS SVQTTTSLPR SVSSAGRLGP DPSLHNQQTY TPQSYKNAIV GNSLGSSSSS
601: FNHHPSSHGV VPTTLPSSSY SQAPTSSYQS SFPYSQDGLL WTGRSPSSVN MGMYNNTYSP AVTSNRSLNH MDVQIAQQQA QSMMTDEFPH LDIINDLLED
701: EQCSNMVYNG SIFNPQPQVF NGQYSSYHGE LLSGGRTRSF GEEGLHYMAR GPYGTDGMMP RQWQMTNMDL SLPAMRSNGM EDGTSSAANY HHSYFGLDAS
801: NPSFTSGING YTEFRPSNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.