Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra010174.1-P | Field mustard | cytosol | 100.0 | 100.0 |
CDY01264 | Canola | cytosol | 63.64 | 68.29 |
CDY01258 | Canola | cytosol | 63.64 | 68.29 |
CDX73257 | Canola | cytosol | 94.55 | 51.23 |
CDX93823 | Canola | cytosol | 70.0 | 39.79 |
AT4G16045.1 | Thale cress | cytosol | 39.09 | 22.51 |
OQU79503 | Sorghum | nucleus | 37.27 | 18.1 |
Os05t0508700-01 | Rice | nucleus | 43.18 | 12.32 |
CDY32539 | Canola | nucleus | 49.55 | 10.84 |
CDY18218 | Canola | nucleus | 51.82 | 10.78 |
CDY10066 | Canola | nucleus | 49.55 | 10.75 |
CDX89828 | Canola | nucleus | 51.36 | 10.65 |
CDX86642 | Canola | nucleus | 50.45 | 10.62 |
CDY22344 | Canola | nucleus | 40.0 | 9.49 |
GSMUA_Achr2P12590_001 | Banana | nucleus | 44.09 | 9.01 |
CDX94711 | Canola | nucleus | 39.09 | 8.93 |
CDX72290 | Canola | cytosol, mitochondrion, plastid | 6.82 | 8.24 |
TraesCS5B01G071600.1 | Wheat | nucleus | 41.36 | 8.11 |
TraesCS5A01G060400.1 | Wheat | nucleus | 41.36 | 8.1 |
HORVU5Hr1G016190.3 | Barley | nucleus | 41.36 | 8.1 |
TraesCS5D01G072000.1 | Wheat | nucleus | 41.36 | 8.1 |
EES16279 | Sorghum | nucleus | 39.55 | 7.75 |
Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 42.73 | 7.21 |
EES01550 | Sorghum | nucleus | 39.55 | 7.19 |
TraesCS3D01G310000.1 | Wheat | nucleus | 41.36 | 7.08 |
TraesCS3A01G321300.2 | Wheat | nucleus | 41.36 | 6.92 |
TraesCS3B01G343300.2 | Wheat | nucleus | 41.36 | 6.9 |
TraesCS1B01G339200.1 | Wheat | nucleus | 43.18 | 6.85 |
KXG22306 | Sorghum | nucleus | 40.0 | 6.83 |
TraesCS1A01G325900.1 | Wheat | nucleus | 42.73 | 6.77 |
TraesCS1D01G327700.1 | Wheat | nucleus | 42.27 | 6.7 |
HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 41.36 | 6.65 |
HORVU1Hr1G078170.6 | Barley | cytosol | 43.18 | 6.61 |
GSMUA_Achr5P03190_001 | Banana | nucleus | 41.82 | 6.52 |
CDY08485 | Canola | cytosol | 13.64 | 3.62 |
CDY55765 | Canola | cytosol | 15.0 | 2.96 |
CDY04994 | Canola | cytosol | 15.0 | 2.96 |
CDX70087 | Canola | cytosol | 15.0 | 2.96 |
CDY14077 | Canola | cytosol | 15.0 | 2.96 |
CDX81009 | Canola | cytosol | 15.0 | 2.95 |
CDX73847 | Canola | cytosol | 14.55 | 2.92 |
CDY53923 | Canola | cytosol | 14.55 | 2.88 |
CDX98939 | Canola | cytosol | 14.55 | 2.87 |
CDY01069 | Canola | cytosol | 14.09 | 2.78 |
CDY00212 | Canola | cytosol | 10.91 | 2.34 |
CDY05943 | Canola | cytosol | 10.0 | 2.12 |
CDY08151 | Canola | cytosol | 10.0 | 2.12 |
CDY35362 | Canola | nucleus, plastid | 8.18 | 1.09 |
CDY11532 | Canola | nucleus, plastid | 8.18 | 1.09 |
CDY58924 | Canola | nucleus, plastid | 8.18 | 1.09 |
CDX76975 | Canola | nucleus, plastid | 7.73 | 1.04 |
CDX86966 | Canola | cytosol | 3.18 | 0.95 |
CDY68000 | Canola | nucleus | 0.45 | 0.94 |
Zm00001d034390_P001 | Maize | nucleus | 0.0 | 0.0 |
Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 0.0 | 0.0 |
CDY72484 | Canola | cytosol | 0.0 | 0.0 |
CDY67533 | Canola | cytosol, nucleus | 0.0 | 0.0 |
CDY47909 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:CDY26906 | EnsemblPlantsGene:GSBRNA2T00036613001 | ncoils:Coil | ProteinID:CDY26906 | ProteinID:CDY26906.1 | SEG:seg |
UniParc:UPI000253F7E0 | UniProt:A0A078GNK9 | MapMan:35.1 | : | : | : |
Description
BnaA05g18060DBnaA05g18060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNK9]
Coordinates
chrLK032196:-:116330..117163
Molecular Weight (calculated)
25549.0 Da
IEP (calculated)
5.126
GRAVY (calculated)
-0.489
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDKTRWESL CAFWLGMDQK SRREMSQEKM DVILKLVVKH FYIKKEVTSS LVMDFLFHGL NSLVWSSTTQ EKILHTISRQ MGKLLKDDLD SSILNALEEE
101: PKKERATDVK NLPAPMVSVD KDMFVLVDDA MLLMEKAVLE PLLDESGPQN RMEVGNDGGR EDEKRLTEFA RRTLEVFILD HILCNKVEGA YKEAIALKMQ
201: EELIREEEEN LNKRRVKSTK
101: PKKERATDVK NLPAPMVSVD KDMFVLVDDA MLLMEKAVLE PLLDESGPQN RMEVGNDGGR EDEKRLTEFA RRTLEVFILD HILCNKVEGA YKEAIALKMQ
201: EELIREEEEN LNKRRVKSTK
0001: MDSILGRFRN FQKSLKGSIV AMFLKLAVTN GTWHLFIFLI LISCVTIKSR DVIVEALCCS ICLQCVRYIL IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ
0101: FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP FRCLDCGYRR ELVRVYFQNV EQICRRFVEE
0201: KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD
0301: MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF STKIEVAHQE AIALKRQEEL IREEEEAWLA
0401: ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA QSSAEKPDTL GDVSDISDSV DGSADILQPD
0501: LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL
0601: ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI
0701: STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN
0801: QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA
0901: QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH YMARGPYGTD GMMPRQWQMT NMDLSLPAMR
1001: SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP FRCLDCGYRR ELVRVYFQNV EQICRRFVEE
0201: KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD
0301: MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF STKIEVAHQE AIALKRQEEL IREEEEAWLA
0401: ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA QSSAEKPDTL GDVSDISDSV DGSADILQPD
0501: LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL
0601: ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI
0701: STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN
0801: QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA
0901: QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH YMARGPYGTD GMMPRQWQMT NMDLSLPAMR
1001: SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [mitochondrion,golgi,extracellular,nucleus]
SUBAcon: [mitochondrion,golgi,extracellular,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.