Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55765 | Canola | cytosol | 97.67 | 97.94 |
| Bra005900.1-P | Field mustard | cytosol | 97.32 | 97.58 |
| CDY14077 | Canola | cytosol | 95.17 | 95.34 |
| CDY04994 | Canola | cytosol | 95.17 | 95.34 |
| CDX70087 | Canola | cytosol | 94.28 | 94.44 |
| AT5G06600.1 | Thale cress | cytosol | 93.65 | 93.82 |
| CDX98939 | Canola | cytosol | 93.65 | 93.82 |
| CDY01069 | Canola | cytosol | 85.33 | 85.56 |
| VIT_08s0032g00600.t01 | Wine grape | cytosol | 84.97 | 85.13 |
| CDY47909 | Canola | cytosol | 8.68 | 85.09 |
| CDY08485 | Canola | cytosol | 62.52 | 84.42 |
| CDY53923 | Canola | cytosol | 83.63 | 84.16 |
| CDX73847 | Canola | cytosol | 81.48 | 83.04 |
| CDY67533 | Canola | cytosol, nucleus | 14.22 | 82.81 |
| Solyc10g081610.1.1 | Tomato | cytosol, extracellular, nucleus | 81.93 | 81.64 |
| PGSC0003DMT400072539 | Potato | cytosol | 81.93 | 81.64 |
| CDY72484 | Canola | cytosol | 9.84 | 67.07 |
| CDX72290 | Canola | cytosol, mitochondrion, plastid | 10.82 | 66.48 |
| CDY68000 | Canola | nucleus | 2.15 | 22.64 |
| CDX73257 | Canola | cytosol | 8.14 | 22.41 |
| CDX93823 | Canola | cytosol | 7.07 | 20.41 |
| CDY00212 | Canola | cytosol | 14.76 | 16.08 |
| CDY05943 | Canola | cytosol | 14.76 | 15.87 |
| CDY08151 | Canola | cytosol | 14.67 | 15.77 |
| CDY32539 | Canola | nucleus | 13.86 | 15.41 |
| CDX86642 | Canola | nucleus | 14.31 | 15.31 |
| CDY10066 | Canola | nucleus | 13.86 | 15.29 |
| CDY26906 | Canola | cytosol | 2.95 | 15.0 |
| CDX89828 | Canola | nucleus | 13.95 | 14.7 |
| CDX94711 | Canola | nucleus | 12.61 | 14.64 |
| CDY18218 | Canola | nucleus | 13.69 | 14.46 |
| CDY01264 | Canola | cytosol | 2.59 | 14.15 |
| CDY22344 | Canola | nucleus | 11.63 | 14.02 |
| CDY01258 | Canola | cytosol | 2.33 | 12.68 |
| CDX86966 | Canola | cytosol | 7.25 | 11.01 |
| CDY11532 | Canola | nucleus, plastid | 15.92 | 10.77 |
| CDY58924 | Canola | nucleus, plastid | 15.92 | 10.76 |
| CDX76975 | Canola | nucleus, plastid | 15.65 | 10.69 |
| CDY35362 | Canola | nucleus, plastid | 15.56 | 10.56 |
Protein Annotations
| MapMan:14.6.2.3 | MapMan:19.2.3.1.1.5 | Gene3D:2.60.210.10 | Gene3D:3.10.20.90 | Gene3D:3.90.70.10 | GO:A0A078CYC9 |
| EnsemblPlants:CDX81009 | ProteinID:CDX81009 | ProteinID:CDX81009.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 |
| EnsemblPlantsGene:GSBRNA2T00134441001 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR028889 | InterPro:MATH/TRAF_dom | PFAM:PF00443 |
| PFAM:PF00917 | PFAM:PF12436 | PFAM:PF14533 | ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50144 |
| PFscan:PS50235 | PANTHER:PTHR24006 | PANTHER:PTHR24006:SF565 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SMART:SM00061 |
| SUPFAM:SSF49599 | SUPFAM:SSF54001 | InterPro:TRAF-like | UniParc:UPI0004EF3655 | InterPro:USP7_ICP0-binding_dom | InterPro:USP_C |
| InterPro:USP_CS | InterPro:USP_dom | SEG:seg | : | : | : |
Description
BnaC03g02630D
Coordinates
chrLK031823:-:1250090..1258900
Molecular Weight (calculated)
131494.0 Da
IEP (calculated)
5.589
GRAVY (calculated)
-0.622
Length
1118 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTMMTPPPVD QQEDEEMLVP HSDVVDGPAQ PMEVSEAETA VSTVENQPAE EPPTLKFTWT IPNFSRQNTR KLYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVADAANL PYGWSRYAQF SLAVVNQIHT RYTIRKETQH QFNARESDWG FTSFMPLSEL YDPGRGYLAN DTVYVEAEVI VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDYKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLQLDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALDEQYG GEEELPQTNP
0501: GFNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRKYK AQAHLFTIIK VARDQDLREQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGIP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVELLDERP IPPPEKSKED ILLFFKLYDP
0701: EKPELRYVGR LMVKSSSKPM DITGKLNEMA GFAPDEDLEL FEEIKFEPGV MCEHLDKKTS FRLCQIEDGD IICFQKHLVK KEIECRYPAV PLFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKLHTYDDVV ERVAHKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDRL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEESFLVYYI YIYIYISLGD YCNLRLCLIQ VELSHPDAEL RLLEVFYHKI YKIFPLTERI ENINDQYWTV RAEEIPEEEK NIGPNDRLIL
1001: VYHFAKETGQ NQQVQNFGEP FFLVIHEGET LEEIKNRIQK KLHVSDEDFA KWKFAFMSMG RPEYLQDSDV VYNRFQRRDV YGAFEQYLGL EHTDTTPKRA
1101: YSANQNRHTY EKPVKIYN
0101: YLDVADAANL PYGWSRYAQF SLAVVNQIHT RYTIRKETQH QFNARESDWG FTSFMPLSEL YDPGRGYLAN DTVYVEAEVI VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDYKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLQLDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALDEQYG GEEELPQTNP
0501: GFNNPPFKFT KYSNAYMLVY IRESDKDKII CNVDEKDIAE HLRVRLKKEQ EEKEDKRKYK AQAHLFTIIK VARDQDLREQ IGKDIYFDLV DHDKVRSFRI
0601: QKQTPFQQFK EEVAKEFGIP VQLQRFWIWA KRQNHTYRPN RPLTPQEELQ PVGQIREASN KANTAELKLF LEVELLDERP IPPPEKSKED ILLFFKLYDP
0701: EKPELRYVGR LMVKSSSKPM DITGKLNEMA GFAPDEDLEL FEEIKFEPGV MCEHLDKKTS FRLCQIEDGD IICFQKHLVK KEIECRYPAV PLFLEYVQNR
0801: QLVRFRALEK PKEDEFVLEL SKLHTYDDVV ERVAHKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDRL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHHAT KEESFLVYYI YIYIYISLGD YCNLRLCLIQ VELSHPDAEL RLLEVFYHKI YKIFPLTERI ENINDQYWTV RAEEIPEEEK NIGPNDRLIL
1001: VYHFAKETGQ NQQVQNFGEP FFLVIHEGET LEEIKNRIQK KLHVSDEDFA KWKFAFMSMG RPEYLQDSDV VYNRFQRRDV YGAFEQYLGL EHTDTTPKRA
1101: YSANQNRHTY EKPVKIYN
0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN
Arabidopsis Description
UBP13UBP13 [Source:UniProtKB/TrEMBL;Acc:A0A178VEE0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.