Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032518.1-P | Field mustard | nucleus | 97.71 | 98.89 |
| CDY10066 | Canola | nucleus | 95.53 | 94.77 |
| CDX86642 | Canola | nucleus | 80.62 | 77.61 |
| CDY68000 | Canola | nucleus | 7.95 | 75.47 |
| CDY18218 | Canola | nucleus | 78.43 | 74.57 |
| CDX89828 | Canola | nucleus | 78.53 | 74.46 |
| AT1G04300.3 | Thale cress | nucleus | 77.73 | 72.27 |
| PGSC0003DMT400042094 | Potato | cytosol | 26.74 | 66.09 |
| OQU79503 | Sorghum | nucleus | 27.24 | 60.49 |
| CDX73257 | Canola | cytosol | 22.76 | 56.4 |
| CDX93823 | Canola | cytosol | 20.48 | 53.23 |
| CDY26906 | Canola | cytosol | 10.84 | 49.55 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 55.57 | 48.78 |
| KRH31732 | Soybean | nucleus | 54.67 | 48.29 |
| KRG92287 | Soybean | nucleus | 54.57 | 48.16 |
| KRH34524 | Soybean | nucleus | 53.88 | 47.5 |
| CDY01258 | Canola | cytosol | 9.44 | 46.34 |
| CDY01264 | Canola | cytosol | 9.44 | 46.34 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 54.47 | 44.63 |
| Os05t0508700-01 | Rice | nucleus | 34.19 | 44.62 |
| Solyc03g005430.2.1 | Tomato | nucleus | 50.6 | 44.3 |
| Solyc06g053750.2.1 | Tomato | nucleus | 49.11 | 43.41 |
| CDX94711 | Canola | nucleus | 41.15 | 42.99 |
| CDY22344 | Canola | nucleus | 39.26 | 42.61 |
| Solyc09g089560.2.1 | Tomato | nucleus | 46.72 | 42.57 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 45.03 | 42.1 |
| EES16279 | Sorghum | nucleus | 43.74 | 39.22 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 42.64 | 38.2 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 42.54 | 38.11 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 42.45 | 38.06 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 42.35 | 37.93 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 45.03 | 32.08 |
| KXG22306 | Sorghum | nucleus | 40.95 | 31.99 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 41.35 | 31.93 |
| EES01550 | Sorghum | nucleus | 38.27 | 31.82 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 41.65 | 30.23 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 41.65 | 30.19 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 38.57 | 30.17 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 41.45 | 30.04 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 39.16 | 29.87 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 38.57 | 29.51 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 39.36 | 28.95 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 41.35 | 28.93 |
| PGSC0003DMT400042093 | Potato | nucleus | 17.5 | 26.35 |
| CDY72484 | Canola | cytosol | 3.78 | 23.17 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 6.56 | 21.36 |
| CDX72290 | Canola | cytosol, mitochondrion, plastid | 2.88 | 15.93 |
| CDY14077 | Canola | cytosol | 16.1 | 14.52 |
| CDY04994 | Canola | cytosol | 16.1 | 14.52 |
| CDX70087 | Canola | cytosol | 15.81 | 14.25 |
| CDY55765 | Canola | cytosol | 15.71 | 14.17 |
| CDX98939 | Canola | cytosol | 15.61 | 14.07 |
| CDX81009 | Canola | cytosol | 15.41 | 13.86 |
| CDY53923 | Canola | cytosol | 14.81 | 13.41 |
| CDX73847 | Canola | cytosol | 14.51 | 13.31 |
| CDY01069 | Canola | cytosol | 14.51 | 13.09 |
| CDY47909 | Canola | cytosol | 1.29 | 11.4 |
| CDY08485 | Canola | cytosol | 8.65 | 10.51 |
| CDY00212 | Canola | cytosol | 7.16 | 7.02 |
| CDY08151 | Canola | cytosol | 7.16 | 6.92 |
| CDY05943 | Canola | cytosol | 7.06 | 6.83 |
| CDY67533 | Canola | cytosol, nucleus | 1.29 | 6.77 |
| CDY58924 | Canola | nucleus, plastid | 10.74 | 6.53 |
| CDY11532 | Canola | nucleus, plastid | 10.64 | 6.48 |
| CDY35362 | Canola | nucleus, plastid | 10.44 | 6.38 |
| CDX76975 | Canola | nucleus, plastid | 10.14 | 6.23 |
| CDX86966 | Canola | cytosol | 4.17 | 5.71 |
Protein Annotations
| EnsemblPlants:CDY32539 | EnsemblPlantsGene:GSBRNA2T00052527001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY32539 | ProteinID:CDY32539.1 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI0004EDD7E8 | UniProt:A0A078H565 | MapMan:22.5.1.6 | : | : |
Description
BnaA09g50570DBnaA09g50570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H565]
Coordinates
chrLK032295:-:437174..442485
Molecular Weight (calculated)
112215.0 Da
IEP (calculated)
6.918
GRAVY (calculated)
-0.748
Length
1006 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAETVDEDSG VGRSVEASTN GQYSLSGEAL SQWRCSTQVE NGTPSTSPSY WDTDDDDDYG LRPSQLFVKH KWKIEKFSEI KKRELRSSVF EAGGYKWYIL
0101: IYPQGCDVWH HLSLFLCVAN HEKLLPGWGH FAQFTIAVAN KDPKKSKFSD TLHRFWKKEH DWGWKKFIES QKLNDGFVDD SDCLTIEAQV QVIRERVDRP
0201: FRCLYRGYRR ELVRVYLTNV VQNCRLFVEE KRSKLERLIE DKARWTSFGV FWLGMDQNSR RRMSTEKMDV ILKGVVKQFF IEKEVIATLV MDFLYSGLKA
0301: LEGQTKSKKS KPRSLDPKEL PAPLVTVDKD MFVLADDVLL LLERAALEPL PPNSDKGPRN RTKDVNDGED DNNEAIERDE RRLTELGRRT VEIFVLSHIF
0401: NKIEVAYREA VALKRQEELI REEEEEWLAE TEQRAKRGAA EREKKSKKKQ AKQKRNRNRG KDKRKEEKAT FATHEKDLEE EKDSVAEKAE SLVEKTDTLG
0501: DVSDISDSVD GSAEILHPDL EDGDSSSAHW DTAALGSSRE NDISISAPNG IAERKNQSNM EDSSSTCSND SIRSGFTNGS SYTGNALIFR NQNSPNKGKN
0601: QPRSQNSTSE SGWVVVSHNQ EPESSRNRSP VGKVQNVAQI IVNSVDMDRP KEKSAAVLTS PRTAAKNPSP LTQPKLEKKN VSVAPNKKVM PASGPPSSNQ
0701: VVPPSSDIGL RADVQKIPAP KQPATTTITR PSSAPVIPAM RPAPIVVSSA QPTTSFPRSV SSAGRLGPDS SLHNQQTYTP QSYKHAIVGN SPGSSSSFNL
0801: HPTTLPSASY SQTPTSSYQS SFPFSQDGLF LGGRSLNSVN MGMNNPYAPT VTSNSSRQQA QNLMTDEFPH LDIINDLLED ENCSNMVFNG SMFSSQPQML
0901: DRQYSYHGGE LLSGGRSRSF GEEGYHYMPH NGLSAAGGPY AADGLIPTQW QMANVDLSLL GMRNNNSNLG DTTAYHHNAY FGLDSSNPSF SSGVNGYTEF
1001: RPSNGH
0101: IYPQGCDVWH HLSLFLCVAN HEKLLPGWGH FAQFTIAVAN KDPKKSKFSD TLHRFWKKEH DWGWKKFIES QKLNDGFVDD SDCLTIEAQV QVIRERVDRP
0201: FRCLYRGYRR ELVRVYLTNV VQNCRLFVEE KRSKLERLIE DKARWTSFGV FWLGMDQNSR RRMSTEKMDV ILKGVVKQFF IEKEVIATLV MDFLYSGLKA
0301: LEGQTKSKKS KPRSLDPKEL PAPLVTVDKD MFVLADDVLL LLERAALEPL PPNSDKGPRN RTKDVNDGED DNNEAIERDE RRLTELGRRT VEIFVLSHIF
0401: NKIEVAYREA VALKRQEELI REEEEEWLAE TEQRAKRGAA EREKKSKKKQ AKQKRNRNRG KDKRKEEKAT FATHEKDLEE EKDSVAEKAE SLVEKTDTLG
0501: DVSDISDSVD GSAEILHPDL EDGDSSSAHW DTAALGSSRE NDISISAPNG IAERKNQSNM EDSSSTCSND SIRSGFTNGS SYTGNALIFR NQNSPNKGKN
0601: QPRSQNSTSE SGWVVVSHNQ EPESSRNRSP VGKVQNVAQI IVNSVDMDRP KEKSAAVLTS PRTAAKNPSP LTQPKLEKKN VSVAPNKKVM PASGPPSSNQ
0701: VVPPSSDIGL RADVQKIPAP KQPATTTITR PSSAPVIPAM RPAPIVVSSA QPTTSFPRSV SSAGRLGPDS SLHNQQTYTP QSYKHAIVGN SPGSSSSFNL
0801: HPTTLPSASY SQTPTSSYQS SFPFSQDGLF LGGRSLNSVN MGMNNPYAPT VTSNSSRQQA QNLMTDEFPH LDIINDLLED ENCSNMVFNG SMFSSQPQML
0901: DRQYSYHGGE LLSGGRSRSF GEEGYHYMPH NGLSAAGGPY AADGLIPTQW QMANVDLSLL GMRNNNSNLG DTTAYHHNAY FGLDSSNPSF SSGVNGYTEF
1001: RPSNGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.