Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89828 | Canola | nucleus | 96.31 | 96.04 |
| CDY68000 | Canola | nucleus | 9.26 | 92.45 |
| CDX86642 | Canola | nucleus | 79.58 | 80.57 |
| CDY32539 | Canola | nucleus | 74.57 | 78.43 |
| CDY10066 | Canola | nucleus | 75.05 | 78.3 |
| AT1G04300.3 | Thale cress | nucleus | 78.45 | 76.71 |
| PGSC0003DMT400042094 | Potato | cytosol | 25.8 | 67.08 |
| OQU79503 | Sorghum | nucleus | 26.75 | 62.47 |
| CDX73257 | Canola | cytosol | 22.68 | 59.11 |
| CDX93823 | Canola | cytosol | 20.23 | 55.3 |
| CDY26906 | Canola | cytosol | 10.78 | 51.82 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 55.01 | 50.79 |
| KRG92287 | Soybean | nucleus | 54.06 | 50.18 |
| KRH31732 | Soybean | nucleus | 53.78 | 49.96 |
| CDY01264 | Canola | cytosol | 9.55 | 49.27 |
| KRH34524 | Soybean | nucleus | 52.84 | 48.99 |
| CDY01258 | Canola | cytosol | 9.45 | 48.78 |
| Solyc03g005430.2.1 | Tomato | nucleus | 50.66 | 46.65 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 53.4 | 46.01 |
| CDX94711 | Canola | nucleus | 41.87 | 46.0 |
| Os05t0508700-01 | Rice | nucleus | 33.18 | 45.53 |
| CDY22344 | Canola | nucleus | 39.7 | 45.31 |
| Solyc06g053750.2.1 | Tomato | nucleus | 48.2 | 44.82 |
| Solyc09g089560.2.1 | Tomato | nucleus | 46.5 | 44.57 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 45.09 | 44.33 |
| EES16279 | Sorghum | nucleus | 44.8 | 42.25 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 43.29 | 40.78 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 43.01 | 40.55 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 43.01 | 40.52 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 43.01 | 40.52 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 44.61 | 33.43 |
| EES01550 | Sorghum | nucleus | 37.9 | 33.14 |
| KXG22306 | Sorghum | nucleus | 39.98 | 32.84 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 39.7 | 32.23 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 38.19 | 31.42 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 41.02 | 31.31 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 40.93 | 31.2 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 40.83 | 31.12 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 38.75 | 31.08 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 38.28 | 30.8 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 38.85 | 30.04 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 40.36 | 29.69 |
| PGSC0003DMT400042093 | Potato | nucleus | 17.2 | 27.25 |
| CDY72484 | Canola | cytosol | 3.97 | 25.61 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 7.47 | 25.57 |
| CDX72290 | Canola | cytosol, mitochondrion, plastid | 2.74 | 15.93 |
| CDY04994 | Canola | cytosol | 15.12 | 14.34 |
| CDY14077 | Canola | cytosol | 15.12 | 14.34 |
| CDY55765 | Canola | cytosol | 14.84 | 14.08 |
| CDX70087 | Canola | cytosol | 14.84 | 14.07 |
| CDX98939 | Canola | cytosol | 14.65 | 13.89 |
| CDX81009 | Canola | cytosol | 14.46 | 13.69 |
| CDY01069 | Canola | cytosol | 14.08 | 13.36 |
| CDY53923 | Canola | cytosol | 13.99 | 13.32 |
| CDX73847 | Canola | cytosol | 13.71 | 13.22 |
| CDY08485 | Canola | cytosol | 7.94 | 10.14 |
| CDY47909 | Canola | cytosol | 0.85 | 7.89 |
| CDY00212 | Canola | cytosol | 6.71 | 6.92 |
| CDY08151 | Canola | cytosol | 6.62 | 6.73 |
| CDY05943 | Canola | cytosol | 6.52 | 6.63 |
| CDY58924 | Canola | nucleus, plastid | 10.21 | 6.53 |
| CDY11532 | Canola | nucleus, plastid | 10.11 | 6.48 |
| CDY35362 | Canola | nucleus, plastid | 9.92 | 6.38 |
| CDX76975 | Canola | nucleus, plastid | 9.74 | 6.29 |
| CDY67533 | Canola | cytosol, nucleus | 1.04 | 5.73 |
| CDX86966 | Canola | cytosol | 3.78 | 5.43 |
Protein Annotations
| EnsemblPlants:CDY18218 | EnsemblPlantsGene:GSBRNA2T00002747001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY18218 | ProteinID:CDY18218.1 | SEG:seg | SMART:SM00061 |
| SUPFAM:SSF49599 | UniParc:UPI0004EE5B1B | UniProt:A0A078G0S7 | MapMan:22.5.1.6 | : | : |
Description
BnaC05g02410DBnaC05g02410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0S7]
Coordinates
chrLK032083:-:377768..382741
Molecular Weight (calculated)
117475.0 Da
IEP (calculated)
6.893
GRAVY (calculated)
-0.715
Length
1058 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAETVPEVSG VSSNGHHSVS GGEALSVWRS SGQVENGTPS TSPSYWDTDD DDDEDYGLKP SQLFGKHTWK IAKFSEINKR ELRSSVFDAG GYKWYILIYP
0101: QGCDVCNHLS LFLCVANHEK LLPGWSHFAQ FTIAVVNKDS KKSKFSDTLH RFWKKEHDWG WKKFMELPKL HEGFIDDSDS LTIEAQVQVI RERVDRPFRC
0201: LHCGYRRELV RVYFNNVEQH CRRFVEEKRI KLGRLIEDKA RWTSFGVFWL GMDQNCRRRM SREKMDVILK GVVKHFFIEK EVTSTLVMDS LYSGLKALQG
0301: QAKNKKARPS LLDAKELPAP IVSVDKDMFV LVDDVLLLLE RAALEPLPTH EDKSPQNRTK DANDGEEVNN EVVERDERRL TELGRRTVEI FVLTHIFSKI
0401: EVAYQEAIAL KRQEELIREE EEAWLAETEQ RAKRGAAERE KKSKKKQAKQ KRNKNKGKDK RKEEKVTVAT HEKDLKENQH DEEEKDSVTE KAQSSAEKTD
0501: ILGDVSDDVS DSVDGSVDIL HPDLEDGDSS SVHWETDTLE TYPPPSGGSD ISISTPNGIG ERKNQSTVDD SSSTCSNDSI RSGVNSGSYK GNALNFRNQK
0601: SPNKGTNHHV KMISGARSLA SETDNQPSTL GTESKSHSSP SESDWVVVSR IQEPESSRNR SPVGKERNVA QIIVNSVDMD RLKVKSAAVL SSPRTAAKNP
0701: SPPLTQTKPE KKSVSSNADA VPNRKVISAP GPPSSSQVVR PSSDIQSQTV GLRADTQKIS SPKQSATTTT ISRPSSAPVI PAMQPPPIIA SSSVQSTSSS
0801: LPRSVSSAGR LGPDTSVHNQ QSFIPQSYKH AIVGNTPGST SSFIHHPSAH GVVPTTLPSS SYSQTPTLSH QSSFPFSQDA LMWAGRSSNS VSMGMSNPYT
0901: PAVTSNRSVS HIDAEIARQQ QPQSLMTDEF PHLDIINDLL EDESCSSMAF NGNIYNSQPQ LFNIQYAYHG GEFISSGRSR SFGEEGFHYM PRVSASGPYG
1001: GDGLMPTQWQ MGSVDLSLLA MRNSNLEDTT PTYHHHTYSS FSPGINGYTE YRPSSNGH
0101: QGCDVCNHLS LFLCVANHEK LLPGWSHFAQ FTIAVVNKDS KKSKFSDTLH RFWKKEHDWG WKKFMELPKL HEGFIDDSDS LTIEAQVQVI RERVDRPFRC
0201: LHCGYRRELV RVYFNNVEQH CRRFVEEKRI KLGRLIEDKA RWTSFGVFWL GMDQNCRRRM SREKMDVILK GVVKHFFIEK EVTSTLVMDS LYSGLKALQG
0301: QAKNKKARPS LLDAKELPAP IVSVDKDMFV LVDDVLLLLE RAALEPLPTH EDKSPQNRTK DANDGEEVNN EVVERDERRL TELGRRTVEI FVLTHIFSKI
0401: EVAYQEAIAL KRQEELIREE EEAWLAETEQ RAKRGAAERE KKSKKKQAKQ KRNKNKGKDK RKEEKVTVAT HEKDLKENQH DEEEKDSVTE KAQSSAEKTD
0501: ILGDVSDDVS DSVDGSVDIL HPDLEDGDSS SVHWETDTLE TYPPPSGGSD ISISTPNGIG ERKNQSTVDD SSSTCSNDSI RSGVNSGSYK GNALNFRNQK
0601: SPNKGTNHHV KMISGARSLA SETDNQPSTL GTESKSHSSP SESDWVVVSR IQEPESSRNR SPVGKERNVA QIIVNSVDMD RLKVKSAAVL SSPRTAAKNP
0701: SPPLTQTKPE KKSVSSNADA VPNRKVISAP GPPSSSQVVR PSSDIQSQTV GLRADTQKIS SPKQSATTTT ISRPSSAPVI PAMQPPPIIA SSSVQSTSSS
0801: LPRSVSSAGR LGPDTSVHNQ QSFIPQSYKH AIVGNTPGST SSFIHHPSAH GVVPTTLPSS SYSQTPTLSH QSSFPFSQDA LMWAGRSSNS VSMGMSNPYT
0901: PAVTSNRSVS HIDAEIARQQ QPQSLMTDEF PHLDIINDLL EDESCSSMAF NGNIYNSQPQ LFNIQYAYHG GEFISSGRSR SFGEEGFHYM PRVSASGPYG
1001: GDGLMPTQWQ MGSVDLSLLA MRNSNLEDTT PTYHHHTYSS FSPGINGYTE YRPSSNGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.