Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G433200.1 | |
| TraesCS3B01G469000.1 | |
| TraesCS3D01G426600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | TraesCS3A01G433200.1 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | TraesCS3B01G469000.1 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | TraesCS3D01G426600.1 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G310000.1 | Wheat | nucleus | 94.54 | 96.97 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 96.21 | 96.5 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 91.51 | 88.23 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 64.29 | 65.08 |
| EES01550 | Sorghum | nucleus | 58.83 | 64.13 |
| PGSC0003DMT400042094 | Potato | cytosol | 18.35 | 59.46 |
| Zm00001d043294_P006 | Maize | nucleus | 57.24 | 58.98 |
| AT5G52330.3 | Thale cress | cytosol | 17.59 | 58.44 |
| Solyc06g053740.2.1 | Tomato | cytosol | 16.68 | 52.88 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 54.89 | 52.24 |
| CDX73257 | Canola | cytosol | 15.62 | 50.74 |
| Bra023279.1-P | Field mustard | cytosol | 12.74 | 48.14 |
| CDX93823 | Canola | cytosol | 13.87 | 47.29 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 34.04 | 41.73 |
| KRH34524 | Soybean | nucleus | 35.86 | 41.45 |
| Bra010174.1-P | Field mustard | cytosol | 6.9 | 41.36 |
| CDY26906 | Canola | cytosol | 6.9 | 41.36 |
| AT4G16045.1 | Thale cress | cytosol | 11.98 | 41.36 |
| KRH31732 | Soybean | nucleus | 35.63 | 41.26 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 35.63 | 41.01 |
| KRG92287 | Soybean | nucleus | 35.18 | 40.7 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 34.27 | 40.29 |
| CDX86642 | Canola | nucleus | 31.39 | 39.62 |
| CDY10066 | Canola | nucleus | 30.4 | 39.55 |
| AT5G43560.1 | Thale cress | nucleus | 31.61 | 39.53 |
| CDY01258 | Canola | cytosol | 6.14 | 39.51 |
| CDY32539 | Canola | nucleus | 29.87 | 39.16 |
| CDX89828 | Canola | nucleus | 31.46 | 39.11 |
| CDY01264 | Canola | cytosol | 6.07 | 39.02 |
| Bra015302.1-P | Field mustard | nucleus | 31.31 | 38.96 |
| CDY18218 | Canola | nucleus | 31.08 | 38.75 |
| AT1G04300.3 | Thale cress | nucleus | 31.54 | 38.45 |
| Bra032518.1-P | Field mustard | nucleus | 28.89 | 38.33 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 35.48 | 38.11 |
| Solyc06g053750.2.1 | Tomato | nucleus | 32.52 | 37.7 |
| Solyc09g089560.2.1 | Tomato | nucleus | 31.39 | 37.5 |
| Solyc03g005430.2.1 | Tomato | nucleus | 32.3 | 37.08 |
| Bra033684.1-P | Field mustard | nucleus | 23.81 | 33.87 |
| CDY22344 | Canola | nucleus | 23.81 | 33.87 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 35.41 | 33.07 |
| CDX94711 | Canola | nucleus | 24.03 | 32.92 |
| PGSC0003DMT400042093 | Potato | nucleus | 10.54 | 20.81 |
| TraesCS5B01G111000.7 | Wheat | cytosol | 12.21 | 14.29 |
| TraesCS3B01G341000.1 | Wheat | cytosol | 11.68 | 13.95 |
| TraesCS2B01G263500.4 | Wheat | nucleus | 11.52 | 13.58 |
| TraesCS4B01G267000.2 | Wheat | mitochondrion, nucleus | 6.6 | 8.1 |
| Bra041162.1-P | Field mustard | cytosol, nucleus, plastid | 1.14 | 7.54 |
| TraesCS6B01G251400.1 | Wheat | nucleus, plastid | 9.33 | 7.4 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G343300.2 | EnsemblPlantsGene:TraesCS3B01G343300 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | ncoils:Coil | PANTHER:PTHR45001 |
| PFAM:PF00917 | PFscan:PS50144 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 | TIGR:cd00121 |
| MapMan:22.5.1.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:552219255..552229391
Molecular Weight (calculated)
144980.0 Da
IEP (calculated)
8.835
GRAVY (calculated)
-0.699
Length
1319 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGAPGPRGT GVRRVPLRRV AQSTSSSSCP CCCDNSHWGR KDKKVVAKLK LDLFVKSLKS GAMLGDALGD DDQSVSGDSM SEWRSCDQVD NGSPSTSPPF
0101: WDTDGEDDDP GPCPSNLFGR HTWRIQNFSK EKKREMKSEP FEAGGFKWYI LVYPQGCDVS NHLSLFLCVA DHDKLLPGWS QFAQFTIAVG NLDPKKVKYS
0201: DTLHKFWKKE HDWGWKKFME LSKIQDGFLV NDVLEIIAQV QVIREKVDRP FRCLERPYRR ELLRVYMTNI EQIYRRFVEE HRSKLSNLIE DKMRWSGFCA
0301: FWLAIDTSTR YRMSREKSDV ILKIIVKHFF VEKEVTSTLV MDSLHTGLKA LEHQCRGKKG RGKLMDLEEL SAPMVHVDMD TFALAGDVLA LLERAALEPL
0401: PCQPLSPKDD KCSQSRTKAG NSGEVKVSIE HEEKRLTEFG QKILETFVLS HIFSGIEVAY QEAVSLKRQE ELIREEEEAG LLESEMKGKR NNTTEKEKRA
0501: KKKQAKQKKN NRKVKDKDRE EKSDSNFAEK DQDESTIHDS EDSKQAGQVA MKVDTSEEGA SDISDNLDGS AEVCQTDAGD KISQPVNGVN DVGVEMKNVH
0601: TGKNSTVEHK PLPCLSESAT MNIMQGKKNN LLDSSSQKSL HRGKTPRTRV ISSKNVPKDE DDLPSSTTGG SDRNTSGCGP APKPDQETVL TTLKDRLRKL
0701: GQRLHEKENE GRKLEGHLEK KAAAEAVSSS SSSSSLDKTP NVVNRPEQPS VTSPDASMYA PPHSQPVITN GANGAIPATP KTTVSTKSGP AVAPSKVKPA
0801: LNLKIDRATS VTPRSLPVDK AATLPSTLSL ANKAIPVPPQ SSTPWVAKAA KGIPAPPKPS AQSNKVTKAA PVPLKSPTPQ VEKVAKAIPA LSKSPAPQVN
0901: KVAPPNAAPR QLPSVSYSEA RKSAVPKKIV GTSVPRTSTA VSRPSSAPLF QAPRSTLPPI PGAQVPPSQS RSLTASRRSS NEPSAPVPSY VPQSYRNAII
1001: GKGSLDTTLS SSDKVTSPGQ SNAISQPLSA YALGTSAMLP PVGRNGQLPG NQGFMSGQGN LDTLDSWHPW KGISDAKEHM LRDDTTYQQM TNGDARILPW
1101: SDNSYQQASN SGTEEQGRFG GIQHRQFQNE IPTNFDSHQL QGSVGEEFPH LGIINDLLEE EQSNVSMAEP PIHEYHPFGL PFSPGGNFTE ADMTSSSSSG
1201: QLNLNGHYYD RLNALHRLGE GQFSTLGAYS NGMADSFSSK PWLYSYPNPM VNPGVNGFSQ QMGDYTNYAS GRTNEEYMYR RANGQWSKVC STVTSHSPSH
1301: SKRREEKRIH YVKCCSLVY
0101: WDTDGEDDDP GPCPSNLFGR HTWRIQNFSK EKKREMKSEP FEAGGFKWYI LVYPQGCDVS NHLSLFLCVA DHDKLLPGWS QFAQFTIAVG NLDPKKVKYS
0201: DTLHKFWKKE HDWGWKKFME LSKIQDGFLV NDVLEIIAQV QVIREKVDRP FRCLERPYRR ELLRVYMTNI EQIYRRFVEE HRSKLSNLIE DKMRWSGFCA
0301: FWLAIDTSTR YRMSREKSDV ILKIIVKHFF VEKEVTSTLV MDSLHTGLKA LEHQCRGKKG RGKLMDLEEL SAPMVHVDMD TFALAGDVLA LLERAALEPL
0401: PCQPLSPKDD KCSQSRTKAG NSGEVKVSIE HEEKRLTEFG QKILETFVLS HIFSGIEVAY QEAVSLKRQE ELIREEEEAG LLESEMKGKR NNTTEKEKRA
0501: KKKQAKQKKN NRKVKDKDRE EKSDSNFAEK DQDESTIHDS EDSKQAGQVA MKVDTSEEGA SDISDNLDGS AEVCQTDAGD KISQPVNGVN DVGVEMKNVH
0601: TGKNSTVEHK PLPCLSESAT MNIMQGKKNN LLDSSSQKSL HRGKTPRTRV ISSKNVPKDE DDLPSSTTGG SDRNTSGCGP APKPDQETVL TTLKDRLRKL
0701: GQRLHEKENE GRKLEGHLEK KAAAEAVSSS SSSSSLDKTP NVVNRPEQPS VTSPDASMYA PPHSQPVITN GANGAIPATP KTTVSTKSGP AVAPSKVKPA
0801: LNLKIDRATS VTPRSLPVDK AATLPSTLSL ANKAIPVPPQ SSTPWVAKAA KGIPAPPKPS AQSNKVTKAA PVPLKSPTPQ VEKVAKAIPA LSKSPAPQVN
0901: KVAPPNAAPR QLPSVSYSEA RKSAVPKKIV GTSVPRTSTA VSRPSSAPLF QAPRSTLPPI PGAQVPPSQS RSLTASRRSS NEPSAPVPSY VPQSYRNAII
1001: GKGSLDTTLS SSDKVTSPGQ SNAISQPLSA YALGTSAMLP PVGRNGQLPG NQGFMSGQGN LDTLDSWHPW KGISDAKEHM LRDDTTYQQM TNGDARILPW
1101: SDNSYQQASN SGTEEQGRFG GIQHRQFQNE IPTNFDSHQL QGSVGEEFPH LGIINDLLEE EQSNVSMAEP PIHEYHPFGL PFSPGGNFTE ADMTSSSSSG
1201: QLNLNGHYYD RLNALHRLGE GQFSTLGAYS NGMADSFSSK PWLYSYPNPM VNPGVNGFSQ QMGDYTNYAS GRTNEEYMYR RANGQWSKVC STVTSHSPSH
1301: SKRREEKRIH YVKCCSLVY
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.