Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | KRH42680 | AT1G27320.1 | 18642946 |
| AT5G43560.1 | KRH58780 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92287 | Soybean | nucleus | 92.99 | 93.07 |
| KRH31732 | Soybean | nucleus | 80.02 | 80.16 |
| PGSC0003DMT400042094 | Potato | cytosol | 26.64 | 74.69 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 79.58 | 73.94 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 70.38 | 70.07 |
| Solyc06g053740.2.1 | Tomato | cytosol | 25.15 | 68.99 |
| AT5G52330.3 | Thale cress | cytosol | 23.14 | 66.5 |
| OQU79503 | Sorghum | nucleus | 26.21 | 66.0 |
| CDX86642 | Canola | nucleus | 50.04 | 54.64 |
| CDY10066 | Canola | nucleus | 48.12 | 54.14 |
| CDY32539 | Canola | nucleus | 47.5 | 53.88 |
| CDX89828 | Canola | nucleus | 49.96 | 53.72 |
| Bra015302.1-P | Field mustard | nucleus | 49.69 | 53.49 |
| AT1G04300.3 | Thale cress | nucleus | 50.48 | 53.23 |
| Bra032518.1-P | Field mustard | nucleus | 46.1 | 52.92 |
| AT5G43560.1 | Thale cress | nucleus | 48.9 | 52.89 |
| CDY18218 | Canola | nucleus | 48.99 | 52.84 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 49.78 | 52.79 |
| Os05t0508700-01 | Rice | nucleus | 33.22 | 49.16 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 45.75 | 46.48 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 45.57 | 46.35 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 45.49 | 46.22 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 45.4 | 46.13 |
| EES16279 | Sorghum | nucleus | 44.79 | 45.54 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 51.8 | 41.86 |
| PGSC0003DMT400042093 | Potato | nucleus | 24.36 | 41.62 |
| EES01550 | Sorghum | nucleus | 41.1 | 38.76 |
| KXG22306 | Sorghum | nucleus | 41.63 | 36.88 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 41.98 | 36.76 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 41.1 | 36.47 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 41.45 | 35.86 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 41.19 | 35.74 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 42.77 | 35.21 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 42.68 | 35.09 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 42.59 | 35.01 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 41.54 | 34.65 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 42.24 | 33.52 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 7.89 | 29.13 |
| KRG98484 | Soybean | cytosol | 2.72 | 27.93 |
| KRG90150 | Soybean | cytosol | 4.12 | 22.17 |
| KRH17929 | Soybean | cytosol | 8.5 | 21.9 |
| KRG89898 | Soybean | cytosol | 7.19 | 21.69 |
| KRG96334 | Soybean | cytosol | 6.49 | 21.26 |
| KRH68070 | Soybean | cytosol | 6.75 | 20.42 |
| KRH46376 | Soybean | cytosol | 5.87 | 19.88 |
| KRG96335 | Soybean | cytosol | 6.57 | 19.79 |
| KRH71763 | Soybean | cytosol | 4.47 | 19.69 |
| KRH32747 | Soybean | cytosol | 6.31 | 19.67 |
| KRH71764 | Soybean | cytosol | 6.13 | 19.44 |
| KRH32941 | Soybean | cytosol | 4.73 | 18.82 |
| KRG96333 | Soybean | cytosol | 6.75 | 18.78 |
| KRH73403 | Soybean | nucleus | 16.39 | 16.73 |
| KRH14719 | Soybean | nucleus | 16.39 | 16.73 |
| KRH33402 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.69 | 15.69 |
| KRG98483 | Soybean | cytosol | 3.33 | 15.32 |
| KRG89895 | Soybean | nucleus | 9.38 | 14.29 |
| KRH17931 | Soybean | mitochondrion, nucleus | 8.33 | 14.03 |
| KRH71762 | Soybean | cytosol | 2.19 | 13.16 |
| KRG90154 | Soybean | cytosol | 2.02 | 12.71 |
| KRG90152 | Soybean | cytosol | 8.5 | 12.37 |
| KRH61745 | Soybean | nucleus | 8.76 | 10.21 |
| KRH33457 | Soybean | cytosol | 1.14 | 8.9 |
| KRH52412 | Soybean | nucleus | 12.27 | 8.34 |
| KRH16103 | Soybean | nucleus | 7.89 | 8.33 |
| KRH61900 | Soybean | cytosol, mitochondrion, nucleus | 7.89 | 8.21 |
| KRH52561 | Soybean | cytosol | 7.89 | 8.06 |
| KRH04994 | Soybean | nucleus | 7.36 | 7.77 |
| KRH61744 | Soybean | cytosol | 3.24 | 5.77 |
Protein Annotations
| EntrezGene:100799509 | Gene3D:2.60.210.10 | MapMan:22.5.1.6 | EMBL:ACUP02006607 | ncoils:Coil | EnsemblPlantsGene:GLYMA_10G188600 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | UniProt:K7LKA0 |
| EnsemblPlants:KRH34524 | ProteinID:KRH34524 | ProteinID:KRH34524.1 | InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 |
| PANTHER:PTHR45001 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000295E7B9 | SEG:seg |
Description
hypothetical protein
Coordinates
chr10:+:42181852..42200398
Molecular Weight (calculated)
126806.0 Da
IEP (calculated)
6.240
GRAVY (calculated)
-0.736
Length
1141 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGTVSEESG VGKSVESIST GQRCQSGEAL AEWRSSEQVE NGIASTSPPY WDTDDEDDGP KPSALYGRYT WKIEKFSQIT KRELRSSAFE VGGYKWYILI
0101: YPQGCDVCNH LSLFLCVANH DKLLPGWSHF AQFTIAVVNK DPKKSKYSDT LHRFWKKEHD WGWKKFMELS KVYDGFVDSS DNLIIKAQVQ VIREKSDRPF
0201: RCLDCQYRRE LVRVYLTNVE QICRRFVEER RSKLGKLIED KARWSSFFTF WREIDQTSRH HMSREKTDVI LKVVVKHFFI EKEVTSTLVM DSLFSGLKAL
0301: EGQTKSKKGR VKLLDAEEIP APIVHVEKDM FVLVDDVLLL LERAAIEPLS PKDEKCPQNR TKDGNSGEDF NKDSIERDER RLTELGRRTL EIFVLAHIFS
0401: NKIEVAYQEA VALKRQEELI REEEAAWQAE SDQKTKRGSE REKKSKKKQA KQKRNNRKGK DKEREERTAA SVPDKNQDNA VDEKNDSKME EAQAVSEKPD
0501: AMEDVSDMSD SVDGVAETLQ LDSEDRDASP VNWDTDASEV NPPTKARNNG IDDVSTMQNG ISEKRSSSVI DDSSSTCSTD SLPSVVMNDP HKGNSFSNYK
0601: VQKSPSRGKN RGKTSSDVGS WTNEIDSQPS GSAADAGDFN DESGNGKIGK SESEVAVISL QDRLKWAEKH VVRKEEEVLS LNKLGIKDLV ETKRPVDNES
0701: LQKEKISTVP SSPISPPRNL SSVQMKLEHK TSATVDPVHV RKTSSSGSQQ TDKDPSSPFT SASPVPAVSK TEIQKPSTAR LSERSVAQVP MMSRPSSAPL
0801: VPGPRPTAPV VVSMVQTAPL LARSVSATGR LGPDPSPATH SHVPQSYRNA MMGNPVASTA ASLAHSSSSS SGVIPSPGYS QPSSFVSSMF LSQSSDRLDT
0901: SAGQSGVPFT MITQDVLQNG PQWIESSQRE SSRSMHYDQP SGLNDVQNHD LYRPVHSRSM GNMSTEFPAC TSGRQNQGYL VDEFPHIDII NDLLDDEQGI
1001: GKTAKASSAF QSLNNGPQLL NRQFTFPGDL GADDDLGSST SSCRFERSQS YHHDHRFQGG YDLSGGHYDS LRDYIQPMSS VPGVNGQVDG LIRNQWQVAG
1101: SDVLYLGMRN TENGSYAYYP DYSNMACGVN GYTVFRPSSG P
0101: YPQGCDVCNH LSLFLCVANH DKLLPGWSHF AQFTIAVVNK DPKKSKYSDT LHRFWKKEHD WGWKKFMELS KVYDGFVDSS DNLIIKAQVQ VIREKSDRPF
0201: RCLDCQYRRE LVRVYLTNVE QICRRFVEER RSKLGKLIED KARWSSFFTF WREIDQTSRH HMSREKTDVI LKVVVKHFFI EKEVTSTLVM DSLFSGLKAL
0301: EGQTKSKKGR VKLLDAEEIP APIVHVEKDM FVLVDDVLLL LERAAIEPLS PKDEKCPQNR TKDGNSGEDF NKDSIERDER RLTELGRRTL EIFVLAHIFS
0401: NKIEVAYQEA VALKRQEELI REEEAAWQAE SDQKTKRGSE REKKSKKKQA KQKRNNRKGK DKEREERTAA SVPDKNQDNA VDEKNDSKME EAQAVSEKPD
0501: AMEDVSDMSD SVDGVAETLQ LDSEDRDASP VNWDTDASEV NPPTKARNNG IDDVSTMQNG ISEKRSSSVI DDSSSTCSTD SLPSVVMNDP HKGNSFSNYK
0601: VQKSPSRGKN RGKTSSDVGS WTNEIDSQPS GSAADAGDFN DESGNGKIGK SESEVAVISL QDRLKWAEKH VVRKEEEVLS LNKLGIKDLV ETKRPVDNES
0701: LQKEKISTVP SSPISPPRNL SSVQMKLEHK TSATVDPVHV RKTSSSGSQQ TDKDPSSPFT SASPVPAVSK TEIQKPSTAR LSERSVAQVP MMSRPSSAPL
0801: VPGPRPTAPV VVSMVQTAPL LARSVSATGR LGPDPSPATH SHVPQSYRNA MMGNPVASTA ASLAHSSSSS SGVIPSPGYS QPSSFVSSMF LSQSSDRLDT
0901: SAGQSGVPFT MITQDVLQNG PQWIESSQRE SSRSMHYDQP SGLNDVQNHD LYRPVHSRSM GNMSTEFPAC TSGRQNQGYL VDEFPHIDII NDLLDDEQGI
1001: GKTAKASSAF QSLNNGPQLL NRQFTFPGDL GADDDLGSST SSCRFERSQS YHHDHRFQGG YDLSGGHYDS LRDYIQPMSS VPGVNGQVDG LIRNQWQVAG
1101: SDVLYLGMRN TENGSYAYYP DYSNMACGVN GYTVFRPSSG P
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.