Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400084727 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43560.1 | PGSC0003DMT400084727 | AT1G27320.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044267 | Potato | nucleus | 36.08 | 50.42 |
| Os12t0597200-01 | Rice | cytosol, nucleus, plastid | 14.22 | 30.74 |
| VIT_05s0020g04980.t01 | Wine grape | nucleus | 45.81 | 26.7 |
| KRH34524 | Soybean | nucleus | 41.62 | 24.36 |
| KRH31732 | Soybean | nucleus | 41.02 | 24.06 |
| KRG92287 | Soybean | nucleus | 40.87 | 23.95 |
| KRG90366 | Soybean | endoplasmic reticulum, plasma membrane | 39.82 | 21.66 |
| Bra032518.1-P | Field mustard | nucleus | 26.95 | 18.11 |
| GSMUA_Achr2P12590_001 | Banana | nucleus | 28.29 | 17.57 |
| AT1G04300.3 | Thale cress | nucleus | 28.44 | 17.56 |
| CDY10066 | Canola | nucleus | 26.65 | 17.55 |
| CDY32539 | Canola | nucleus | 26.35 | 17.5 |
| Bra015302.1-P | Field mustard | nucleus | 27.69 | 17.45 |
| CDX89828 | Canola | nucleus | 27.69 | 17.44 |
| CDX86642 | Canola | nucleus | 27.1 | 17.32 |
| CDY18218 | Canola | nucleus | 27.25 | 17.2 |
| AT5G43560.1 | Thale cress | nucleus | 26.95 | 17.06 |
| TraesCS5B01G071600.1 | Wheat | nucleus | 27.84 | 16.58 |
| TraesCS5A01G060400.1 | Wheat | nucleus | 27.69 | 16.47 |
| TraesCS5D01G072000.1 | Wheat | nucleus | 27.54 | 16.38 |
| HORVU5Hr1G016190.3 | Barley | nucleus | 27.4 | 16.3 |
| EES16279 | Sorghum | nucleus | 27.1 | 16.13 |
| GSMUA_Achr5P03190_001 | Banana | nucleus | 29.04 | 13.74 |
| KXG22306 | Sorghum | nucleus | 21.56 | 11.18 |
| TraesCS3D01G310000.1 | Wheat | nucleus | 20.81 | 10.81 |
| EES01550 | Sorghum | nucleus | 19.46 | 10.74 |
| Os01t0775300-01 | Rice | cytosol, mitochondrion, nucleus | 20.81 | 10.67 |
| TraesCS3B01G343300.2 | Wheat | nucleus | 20.81 | 10.54 |
| TraesCS1B01G339200.1 | Wheat | nucleus | 21.86 | 10.53 |
| TraesCS1D01G327700.1 | Wheat | nucleus | 21.71 | 10.45 |
| TraesCS3A01G321300.2 | Wheat | nucleus | 20.51 | 10.42 |
| HORVU3Hr1G075800.5 | Barley | cytosol, nucleus, plastid | 21.26 | 10.38 |
| TraesCS1A01G325900.1 | Wheat | nucleus | 21.41 | 10.3 |
| HORVU1Hr1G078170.6 | Barley | cytosol | 21.71 | 10.08 |
| PGSC0003DMT400047483 | Potato | nucleus | 6.29 | 7.14 |
| PGSC0003DMT400007793 | Potato | cytosol | 8.38 | 5.04 |
| Os05t0508700-01 | Rice | nucleus | 5.69 | 4.93 |
| PGSC0003DMT400072539 | Potato | cytosol | 7.49 | 4.46 |
| PGSC0003DMT400047482 | Potato | nucleus | 0.75 | 0.89 |
| PGSC0003DMT400042094 | Potato | cytosol | 0.45 | 0.74 |
| AT5G52330.3 | Thale cress | cytosol | 0.3 | 0.5 |
| Solyc06g053740.2.1 | Tomato | cytosol | 0.3 | 0.48 |
| OQU79503 | Sorghum | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400042093 | EnsemblPlantsGene:PGSC0003DMG401016322 | PANTHER:PTHR45001 | PGSC:PGSC0003DMG401016322 | SEG:seg | UniParc:UPI000294F2AE |
| UniProt:M1BCH7 | MapMan:35.1 | : | : | : | : |
Description
MATH domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401016322]
Coordinates
chr6:+:39874877..39884172
Molecular Weight (calculated)
72462.1 Da
IEP (calculated)
6.013
GRAVY (calculated)
-0.594
Length
668 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHDKTEVDG PIGEGNEYMA EVPGQVLGKS DVLEEVSDIS DSIDSIIHPD SEDRNASPVN WDTDSSDVHP SMEAGCSRLI GLSVLQNVIA GRISPSMMDD
101: SSSTCSTDSI VSVVINGTHR GFPLIQKNQK LPSRGRNERS RSTCKAADWA SETLGQTSDG VSDDGQISDT SVSCGATGSE CQATALPSCE QQATNKKVAV
201: LQQRNLIDDR ERSSILKPSV QSPSRSPQKS TVSDVQSKEN LKISVTSDPI LVKSSFSDSP KLTDKSGPVV VSAETSVMLK ADPHKAVEVK PLKKPLLQPA
301: SISTEKSLSK QVTTSATAER SISRQVPAQS RPLSAPLVTD RRPASPVVSM VQVTQLLPHS VSAAGRLGPD PSPATHSYIP QSYRNAIMGG LVSGSPVGFS
401: QPHSPSSAIN SPHPYSQSPS LTSGLMLSPE GPERTEHRSA GPSFSYGMAN EDTSWNGQKW ESSASYSRSV SHPFVLNDIQ ESDMLKPVNS RTHDHLPSEL
501: PACTSGCQSQ SVLADEFPHL DIINDLLNDE NGIGRASEPN SGWQRYSNHL NRQFSYPGDI SMATDLGPST RSCRFERTRS YNDELQHYYS GGLYNSIRNM
601: IPQPNPQFVN GQIDQLVHDQ WQLMRSDPSF LGMRNGHTDT GYLYHTPDYS NMACGVNRYR VFRPSNGF
101: SSSTCSTDSI VSVVINGTHR GFPLIQKNQK LPSRGRNERS RSTCKAADWA SETLGQTSDG VSDDGQISDT SVSCGATGSE CQATALPSCE QQATNKKVAV
201: LQQRNLIDDR ERSSILKPSV QSPSRSPQKS TVSDVQSKEN LKISVTSDPI LVKSSFSDSP KLTDKSGPVV VSAETSVMLK ADPHKAVEVK PLKKPLLQPA
301: SISTEKSLSK QVTTSATAER SISRQVPAQS RPLSAPLVTD RRPASPVVSM VQVTQLLPHS VSAAGRLGPD PSPATHSYIP QSYRNAIMGG LVSGSPVGFS
401: QPHSPSSAIN SPHPYSQSPS LTSGLMLSPE GPERTEHRSA GPSFSYGMAN EDTSWNGQKW ESSASYSRSV SHPFVLNDIQ ESDMLKPVNS RTHDHLPSEL
501: PACTSGCQSQ SVLADEFPHL DIINDLLNDE NGIGRASEPN SGWQRYSNHL NRQFSYPGDI SMATDLGPST RSCRFERTRS YNDELQHYYS GGLYNSIRNM
601: IPQPNPQFVN GQIDQLVHDQ WQLMRSDPSF LGMRNGHTDT GYLYHTPDYS NMACGVNRYR VFRPSNGF
001: MDQNSRRRMC REKVDVILKG VVKHFFVEKE VSSTLVMDSL YSGLKALEGQ TKNMKARSRL LDAKQLPAPI VSVDKDMFVL VDDVLLLLER AALEPLPPKD
101: EKGRQNRTKD GNDGEEVNKE ADERDERRLT ELGRRTVEIF ILSHIFSTKI EVAHQEAIAL KRQEELIREE EEAWLAETEQ RAKRGAAERE KKSKKKQAKQ
201: KRNKNKGKDK RKEEKVSFAT HAKDLEENQN QNQNDEEEKD SVTEKAQSSA EKPDTLGDVS DISDSVDGSA DILQPDLEDR DSSSVLWDTD ALEIHPPSSE
301: GSSRGRGISI STPNGITEGK SHSTMDDSSS TCSNDSIRSG VTNGSYQGNS LNFRNQKSPN KGKNQQVKAM TDAHSLASET DDQPSTLGTD PKGQNYSSEA
401: SNVGESDWVV VSHIQEPEGS RNRIPVGRER KTVQSIVNSV DMDRPKEKST AVLSSPRNVA KNPSPLTQTK PEKKSISTAD GIPNRKVLAT GPPSSSQVVL
501: PSDIQSQTVG LRADMQKLSA PKQPPATTIS RPSSAPIIPA MRPSPITVSS SVQTTTSLPR SVSSAGRLGP DPSLHNQQTY TPQSYKNAIV GNSLGSSSSS
601: FNHHPSSHGV VPTTLPSSSY SQAPTSSYQS SFPYSQDGLL WTGRSPSSVN MGMYNNTYSP AVTSNRSLNH MDVQIAQQQA QSMMTDEFPH LDIINDLLED
701: EQCSNMVYNG SIFNPQPQVF NGQYSSYHGE LLSGGRTRSF GEEGLHYMAR GPYGTDGMMP RQWQMTNMDL SLPAMRSNGM EDGTSSAANY HHSYFGLDAS
801: NPSFTSGING YTEFRPSNGH
101: EKGRQNRTKD GNDGEEVNKE ADERDERRLT ELGRRTVEIF ILSHIFSTKI EVAHQEAIAL KRQEELIREE EEAWLAETEQ RAKRGAAERE KKSKKKQAKQ
201: KRNKNKGKDK RKEEKVSFAT HAKDLEENQN QNQNDEEEKD SVTEKAQSSA EKPDTLGDVS DISDSVDGSA DILQPDLEDR DSSSVLWDTD ALEIHPPSSE
301: GSSRGRGISI STPNGITEGK SHSTMDDSSS TCSNDSIRSG VTNGSYQGNS LNFRNQKSPN KGKNQQVKAM TDAHSLASET DDQPSTLGTD PKGQNYSSEA
401: SNVGESDWVV VSHIQEPEGS RNRIPVGRER KTVQSIVNSV DMDRPKEKST AVLSSPRNVA KNPSPLTQTK PEKKSISTAD GIPNRKVLAT GPPSSSQVVL
501: PSDIQSQTVG LRADMQKLSA PKQPPATTIS RPSSAPIIPA MRPSPITVSS SVQTTTSLPR SVSSAGRLGP DPSLHNQQTY TPQSYKNAIV GNSLGSSSSS
601: FNHHPSSHGV VPTTLPSSSY SQAPTSSYQS SFPYSQDGLL WTGRSPSSVN MGMYNNTYSP AVTSNRSLNH MDVQIAQQQA QSMMTDEFPH LDIINDLLED
701: EQCSNMVYNG SIFNPQPQVF NGQYSSYHGE LLSGGRTRSF GEEGLHYMAR GPYGTDGMMP RQWQMTNMDL SLPAMRSNGM EDGTSSAANY HHSYFGLDAS
801: NPSFTSGING YTEFRPSNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.