Factsheet for PGSC0003DMT400084727

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729
PGSC0003DMT400042093
PGSC0003DMT400042094
PGSC0003DMT400051833
PGSC0003DMT400081747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27320.1	PGSC0003DMT400081747	AT3G21510.1	16965536
AT1G27320.1	PGSC0003DMT400051833	AT3G29350.1	16965536
AT1G27320.1	PGSC0003DMT400015729	AT5G35750.1	16965536
AT1G27320.1	PGSC0003DMT400042093	AT5G43560.1	18642946
AT1G27320.1	PGSC0003DMT400042094	AT5G43560.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g015610.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	98.14	51.16
VIT_01s0010g03780.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	79.37	41.1
KRH42680	Soybean	plasma membrane	76.95	40.19
KRH58780	Soybean	endoplasmic reticulum, golgi, plasma membrane	76.21	39.81
Bra030037.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	72.86	38.54
CDY15717	Canola	endoplasmic reticulum, golgi, plasma membrane	72.86	38.39
AT1G27320.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	73.23	38.03
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, peroxisome, plasma membrane	68.59	37.85
CDY03909	Canola	endoplasmic reticulum, golgi, plasma membrane	70.26	37.76
GSMUA_Achr4P15980_001	Banana	cytosol	68.59	36.97
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	67.84	36.57
TraesCS3B01G469000.1	Wheat	cytosol, golgi, mitochondrion, peroxisome	64.13	34.19
TraesCS3D01G426600.1	Wheat	plasma membrane	63.2	34.17
TraesCS3A01G433200.1	Wheat	peroxisome	63.38	34.0
Zm00001d042312_P003	Maize	golgi, mitochondrion, plasma membrane	63.38	33.86
KXG34012	Sorghum	cytosol, peroxisome, plasma membrane	62.64	33.53
Os01t0923700-04	Rice	endoplasmic reticulum, golgi, peroxisome	63.57	33.43
Zm00001d012005_P002	Maize	plasma membrane	63.75	32.85
HORVU3Hr1G094870.10	Barley	plasma membrane	63.38	32.57
PGSC0003DMT400075775	Potato	endoplasmic reticulum, golgi, plasma membrane	55.2	29.94
PGSC0003DMT400081399	Potato	cytosol, plasma membrane, vacuole	16.91	14.33
PGSC0003DMT400071109	Potato	cytosol, endoplasmic reticulum, plasma membrane	18.03	13.18
PGSC0003DMT400020285	Potato	endoplasmic reticulum, plasma membrane, plastid	18.22	13.0
PGSC0003DMT400060160	Potato	endoplasmic reticulum	15.61	11.01
PGSC0003DMT400041983	Potato	plasma membrane	15.43	10.91
PGSC0003DMT400075949	Potato	cytosol	19.33	10.26
PGSC0003DMT400073847	Potato	plasma membrane	14.5	10.17
PGSC0003DMT400044244	Potato	plasma membrane	14.13	10.09
PGSC0003DMT400009219	Potato	plastid	18.96	8.42
PGSC0003DMT400011818	Potato	extracellular, golgi, peroxisome	7.99	5.61
VIT_04s0008g03460.t01	Wine grape	plastid	0.56	0.89
PGSC0003DMT400015729	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.287.130	MapMan:11.4.2.1	Gene3D:3.30.450.350	Gene3D:3.30.565.10	InterPro:CHASE_dom	GO:GO:0000003
GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004673	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886
GO:GO:0006464	GO:GO:0006810	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009409	GO:GO:0009414
GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0009991	GO:GO:0010029	GO:GO:0010087
GO:GO:0010150	GO:GO:0010271	GO:GO:0016020	GO:GO:0016021	GO:GO:0016036	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0023014	GO:GO:0034757	GO:GO:0038023	GO:GO:0040007
GO:GO:0042742	GO:GO:0043424	GO:GO:0048509	GO:GO:0048831	GO:GO:0070417	GO:GO:0071215
GO:GO:0071329	GO:GO:0080117	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom
InterPro:IPR005467	InterPro:IPR006189	InterPro:IPR036890	UniProt:M1D7X1	PFAM:PF00512	PFAM:PF03924
EnsemblPlantsGene:PGSC0003DMG400034307	PGSC:PGSC0003DMG400034307	EnsemblPlants:PGSC0003DMT400084727	PFscan:PS50109	PFscan:PS50839	PANTHER:PTHR43719
PANTHER:PTHR43719:SF14	SMART:SM00388	SMART:SM01079	SUPFAM:SSF47384	SUPFAM:SSF55874	TMHMM:TMhelix
UniParc:UPI0002967BB4	SEG:seg	:	:	:	:

Description

Histidine kinase 3B [Source:PGSC_GENE;Acc:PGSC0003DMG400034307]

Coordinates

chr5:+:14357614..14364165

Molecular Weight (calculated)

60642.2 Da

IEP (calculated)

7.978

GRAVY (calculated)

-0.183

Length

538 amino acids

Sequence
(BLAST)

001: MTSSKTLLGD GEHIVKKLWE LSAKIYYCYP QYVGNRKVGN KWWRKLLIVW LLFWIVVSFS VLWYMNSKAV EKRKETLTSM CDERARMLQD QFNVSMNHVQ
101: AMSILISTFH HARNPSAIDQ CTFASYTERT AFERPLTSGV AYAVRVLHSE RKEFEKRHGW SIKRMDTREP TPVHKDNEYD RDGLEPSPIQ AEYAPVIFAQ
201: DTIAHVISVD MLSGKEDREN VLRARESGKG VLTAPFRLLK TNHLGVIKTF AVYKTDLPSN ATPNERIQAT DGYLGGVLDI ESLVEKLLQQ LASKQTILVN
301: VYDMTNISHP ISMYGSNVSS DGLEHVSALN FGDPFRRHEM RCRFKQKPPW PWLAITTATG ILIIALLIGQ IFHATINRIA KVEDDYHEMM MLKKRAEAAD
401: VAKSQFLATV SHEIRTPMNG VLGMLHMLTD TNLDVTQQDY VSTAQASGKA LVSLINEVLD QAKIESGKLE LDAVCFDVRA TLDEVLSLFS GKSQEKGVEL
501: AGYISDKVPD VLIGDPGRFR QIITNLVGNS IKVSSLIS

Best Arabidopsis Sequence Match ( AT1G27320.1 )
(BLAST)

0001: MSLFHVLGFG VKIGHLFWML CCWFVSWFVD NGIEDKSGLL VGSVGDLEKT KMTTLKKKNK MWFWNKISSS GLKIPSFSYQ FLGSVKFNKA WWRKLVVVWV
0101: VFWVLVSIWT FWYFSSQAME KRKETLASMC DERARMLQDQ FNVSMNHVQA MSILISTFHH GKIPSAIDQR TFSEYTDRTS FERPLTSGVA YAMRVLHSER
0201: EEFERQQGWT IRKMYSLEQN PVHKDDYDLE ALEPSPVQEE YAPVIFAQDT VSHVVSLDML SGKEDRENVL RARSSGKGVL TAPFPLIKTN RLGVILTFAV
0301: YKRDLPSNAT PKERIEATNG YLGGVFDIES LVENLLQQLA SKQTILVNVY DITNHSQPIS MYGTNVSADG LERVSPLIFG DPLRKHEMRC RFKQKPPWPV
0401: LSMVTSFGIL VIALLVAHII HATVSRIHKV EEDCDKMKQL KKKAEAADVA KSQFLATVSH EIRTPMNGVL GMLHMLMDTE LDVTQQDYVR TAQASGKALV
0501: SLINEVLDQA KIESGKLELE EVRFDLRGIL DDVLSLFSSK SQQKGVELAV YISDRVPDML IGDPGRFRQI LTNLMGNSIK FTEKGHIFVT VHLVDELFES
0601: IDGETASSPE STLSGLPVAD RQRSWENFKA FSSNGHRSFE PSPPDINLIV SVEDTGVGIP VEAQSRIFTP FMQVGPSISR THGGTGIGLS ISKCLVGLMK
0701: GEIGFSSTPK VGSTFTFTAV FSNGMQPAER KNDNNQPIFS EFRGMKAVVV DHRPARAKVS WYHFQRLGIR VEVVPRVEQA LHYLKIGTTT VNMILIEQEI
0801: WNREADDFIK KLQKDPLFLS PKLILLANSV ESSISEALCT GIDPPIVIVK PLRASMLAAT LQRGLGIGIR EPPQHKGPPA LILRNLLLGR KILIVDDNNV
0901: NLRVAAGALK KYGADVVCAE SGIKAISLLK PPHEFDACFM DIQMPEMDGF EATRRIRDME EEMNKRIKNG EALIVENGNK TSWHLPVLAM TADVIQATHE
1001: ECLKCGMDGY VSKPFEAEQL YREVSRFFNS PSDTES

Arabidopsis Description

AHK3HK3 [Source:UniProtKB/TrEMBL;Acc:A0A178WL02]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.