Factsheet for PGSC0003DMT400009219

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400051833

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17820.1	PGSC0003DMT400051833	AT3G29350.1	10930573

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g083670.2.1	Tomato	cytosol	6.11	98.67
Solyc02g083680.1.1	Tomato	plastid	70.93	97.72
VIT_04s0023g03680.t01	Wine grape	mitochondrion	70.52	69.15
KRH76639	Soybean	cytosol, endoplasmic reticulum, plasma membrane	66.64	64.72
KRH28811	Soybean	cytosol, endoplasmic reticulum, nucleus	66.47	64.71
KRH08036	Soybean	plastid	64.99	64.46
KRH69761	Soybean	plastid	64.99	64.19
CDY20843	Canola	nucleus	62.92	63.87
CDY24380	Canola	nucleus	62.43	63.32
Bra002095.1-P	Field mustard	nucleus	62.18	63.07
AT2G17820.1	Thale cress	cytosol, nucleus, plasma membrane	62.76	62.97
PGSC0003DMT400015729	Potato	cytosol	7.43	24.46
PGSC0003DMT400011818	Potato	extracellular, golgi, peroxisome	14.86	23.5
PGSC0003DMT400075775	Potato	endoplasmic reticulum, golgi, plasma membrane	16.85	20.56
PGSC0003DMT400071109	Potato	cytosol, endoplasmic reticulum, plasma membrane	11.56	19.02
PGSC0003DMT400084727	Potato	cytosol, golgi, plasma membrane	8.42	18.96
PGSC0003DMT400020285	Potato	endoplasmic reticulum, plasma membrane, plastid	11.23	18.04
PGSC0003DMT400081399	Potato	cytosol, plasma membrane, vacuole	9.41	17.95
PGSC0003DMT400041983	Potato	plasma membrane	10.49	16.69
PGSC0003DMT400073847	Potato	plasma membrane	10.49	16.56
PGSC0003DMT400075949	Potato	cytosol	13.29	15.88
PGSC0003DMT400044244	Potato	plasma membrane	9.74	15.67
PGSC0003DMT400060160	Potato	endoplasmic reticulum	9.74	15.47

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:102596157	Gene3D:3.30.565.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:CheY-like_superfamily
GO:GO:0000003	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871
GO:GO:0005034	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006468
GO:GO:0006950	GO:GO:0006970	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009414	GO:GO:0009628	GO:GO:0009791	GO:GO:0009927	GO:GO:0009987
GO:GO:0010375	GO:GO:0010431	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0016772	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	InterPro:HATPase_C
InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR001789	InterPro:IPR005467
InterPro:IPR036890	UniProt:M0ZVT1	PFAM:PF00072	PFAM:PF00512	PFAM:PF02518	EnsemblPlantsGene:PGSC0003DMG400003578
PGSC:PGSC0003DMG400003578	EnsemblPlants:PGSC0003DMT400009219	PRINTS:PR00344	PFscan:PS50109	PFscan:PS50110	PANTHER:PTHR43711
PANTHER:PTHR43711:SF1	SMART:SM00387	SMART:SM00388	SMART:SM00448	SUPFAM:SSF47384	SUPFAM:SSF52172
SUPFAM:SSF55874	InterPro:Sig_transdc_His_kin-like_C	InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	UniParc:UPI00029697BA	RefSeq:XP_006340755.1
SEG:seg	:	:	:	:	:

Description

Cold inducible histidine kinase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400003578]

Coordinates

chr2:-:39194428..39201003

Molecular Weight (calculated)

134871.0 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.192

Length

1211 amino acids

Sequence
(BLAST)

0001: MAHNKATYGT TTTLSIESPS PPITPKGSLP EKFLSKMLGF ADFSKRNQSP SRSGSGTPRN YQVDEELPFD SSICHSSYRG VFVVRLAIMV MLAILIGMLT
0101: LLTWHFTRVY TTKSLNTLAF GLRHELLQRP ILRMWNILNS TVEITTAQVK LSEYVIRKYS KPVDQAQQVE LYESMKDVTW ALFASRKALN SLTINYKNGF
0201: VQAFHRDHRS NNTFYIYSDL ANYSISNTYD VNLLSSRQGW NDQTIHNNIS AIWYREPLDP STGERNGKRS IIPPDELINI AGISQVPDGA ASWHVAVSKY
0301: TDSPLLSAAL PVWDPSNKTI VAVVGVTTAL YSVGQLMKEI VEFHSGHIYL TSQEGWLLAT STNSPLLMNT TKGPKLMMAI DSEDPVIRSG AECLQKEYGK
0401: RLPPSQEVHI ENAKLGNQLY YIDSFYLQLK RLPMVGVIII PRKYIMGKVD ERAIKTLVIL ISASICILII GCVCIFVLTD GVSKEMKLRA ELISQLDARR
0501: KAEASSNYKS QFLANMSHEL RTPMAAVIGL LDILISDGFL TNEQYATITQ IRKCSTALLR LLNNILDLSK VESGKLVLEE TEFDLARELE GLVDMFSVQC
0601: INHNVETVLD LSDDMPKLVK GDSARVVQIF ANLISNSLKF TTSGYIILRG WCGSARGGNF PLNQKDSWSA PKVKLKRQES QGKRFSKKDN KMILWFEVED
0701: SGCGIDPSKW ESVFESFEQA DPSTTRLHGG TGLGLCIVRT LVNKMGGEIK VVKKNGPGTV MQLCLQLNCP AEVAGQHCQF SFEEHKMRVL LALNGKMGRV
0801: IMSQWLKRNG VHTWGASDWN ELTQILQGIT ISKGHLQDTP CECLDPEDLS IQDPNASSPF VIVVDIGILD LSTSIWKEQL NFLDKYHGRA KFAWILYHDT
0901: SSTIKMELRR RRHLLMVNRP LYKGKMIQIL EAIIKEKTLE LQSFGNAPVE GDSHECLEID PNHSDIACSD DSDKSDNGNN KCASAFLSEK KRDENFVKAS
1001: LSHYGTLNNY FIDFNSVDVE ENAPDRTHLG QTRDGEHNLT STATKEVTNA CSNKVAGQKS LAGLCILLAE DTPVLQRVAT IMLEKLGAKV VVVGDGLQAV
1101: EALKPVLNSD ECRNESLQED DNTITSQAEG SYDLILMDCQ MPKMDGYEAT KAIRRSEMGT GTHIPIVALT AHAMSSDEAK CLQVGMDAYL TKPIDSKLMV
1201: STILSLTKRK A

Best Arabidopsis Sequence Match ( AT2G17820.1 )
(BLAST)

0001: MRGDSFSMSI ENLPDSPMGS RKKKMQIRKV FDKMTEWVTP WRSNLESPRE MMILRGDVEQ DEFQYASSHC LSSYYSVFVV RLAIMVMLAI LIGLLTVLTW
0101: HFTRIYTKQS LQTLAYGLRY ELLQRPVLRM WSVLNTTSEL TTAQVKLSEY VIKKYDKPTT QEELVEMYQA MKDVTWALFA SAKALNAITI NYRNGFVQAF
0201: HRDPASSSTF YIFSDLKNYS ISGTGPEDVS GWNNKSIHGN MSAIWYQQQL DPVTGENLGK PLKIPPDDLI NIAGISQVPD GEASWHVTVS KYMDSPLLSA
0301: ALPVFDASNK SIVAVVGVTT ALYSVGQLMR DLVEVHGGHI YLTSQEGYLL ATSTDGPLLK NTSNGPQLMK ATDSEEWVIK SGAQWLEKTY GSKRPHVVHA
0401: ENVKLGDQRY YIDSFYLNLK RLPIVGVVII PRKFIMGKVD ERAFKTLIIL ISASVCIFFI GCVCILILTN GVSKEMKLRA ELIRQLDARR RAEASSNYKS
0501: QFLANMSHEL RTPMAAVIGL LDILISDDCL SNEQYATVTQ IRKCSTALLR LLNNILDLSK VESGKLVLEE AEFDLGRELE GLVDMFSVQC INHNVETVLD
0601: LSDDMPALVR GDSARLVQIF ANLISNSIKF TTTGHIILRG WCENINSLHD EMSVSVDRRK PWAPMKTKQV QHRNHLQKSC KNANKMVLWF EVDDTGCGID
0701: PSKWDSVFES FEQADPSTTR THGGTGLGLC IVRNLVNKMG GEIKVVQKNG LGTLMRLYLI LSTPDTVDQN IQPDFSKYGL VVMLSMYGST ARMITSKWLR
0801: KHGIATVEAS DWNELTQIIR DLLETGSRDN SFDSQHNISD PLRAELSNIV EIKNPVFVIV VDIGVLDLTT NIWKEQLNYL DRFSNKAKFA WLLKHDTSNT
0901: VKTELRRKGH VMMVNKPLYK AKMIQILEAV IKNRKRGLCN DLRNRGNGSD ESHDCLEIDP TQFDTCSSDD SSETSGEKQV DKSVKPSTLH SPVLKNYLID
1001: ATTSNDDSTS ASMTQKNPEE EDWKDRLYSG IALDGKNQKS LEGIRILLAE DTPVLQRVAT IMLEKMGATV TAVWDGQQAV DSLNYKSINA QAPTEEHKSF
1101: EEETANKVTT RETSLRNSSP YDLILMDCQM PKMDGYEATK AIRRAEIGTE LHIPIVALTA HAMSSDEAKC LEVGMDAYLT KPIDRKLMVS TILSLTKPSA
1201: FQTSLSA

Arabidopsis Description

AHK1Histidine kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXL4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.