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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • endoplasmic reticulum 3
  • extracellular 1
  • plasma membrane 2
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, plastid
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:endoplasmic reticulum
Plant-mPloc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400020285
PGSC0003DMT400021612
PGSC0003DMT400041983
PGSC0003DMT400044244
PGSC0003DMT400051833
PGSC0003DMT400055484
PGSC0003DMT400060160
PGSC0003DMT400071109
PGSC0003DMT400073847
PGSC0003DMT400081399
PGSC0003DMT400081747

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G66340.1 PGSC0003DMT400041983 AT1G04310.1 18577522
AT1G66340.1 PGSC0003DMT400044244 AT1G04310.1 18577522
AT1G66340.1 PGSC0003DMT400020285 AT1G66340.1 18384742
AT1G66340.1 PGSC0003DMT400071109 AT1G66340.1 18384742
AT1G66340.1 PGSC0003DMT400020285 AT1G66340.1 18577522
AT1G66340.1 PGSC0003DMT400071109 AT1G66340.1 18577522
AT1G66340.1 PGSC0003DMT400081399 AT2G40940.1 18577522
AT1G66340.1 PGSC0003DMT400060160 AT3G04580.1 18577522
AT1G66340.1 PGSC0003DMT400073847 AT3G04580.1 18577522
AT1G66340.1 PGSC0003DMT400081747 AT3G21510.1 10930573
AT1G66340.1 PGSC0003DMT400081747 AT3G21510.1 18384742
AT1G66340.1 PGSC0003DMT400041983 AT3G23150.1 18577522
AT1G66340.1 PGSC0003DMT400044244 AT3G23150.1 18577522
AT1G66340.1 PGSC0003DMT400051833 AT3G29350.1 10930573
AT1G66340.1 PGSC0003DMT400055484 AT5G03280.1 19769567
AT1G66340.1 PGSC0003DMT400021612 AT5G03730.1 12837948
AT1G66340.1 PGSC0003DMT400021612 AT5G03730.1 8417317
AT1G66340.1 PGSC0003DMT400021612 AT5G03730.1 9560288
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g011330.2.1 Tomato endoplasmic reticulum, plasma membrane, plastid 98.14 98.14
PGSC0003DMT400071109 Potato cytosol, endoplasmic reticulum, plasma membrane 84.22 86.28
VIT_19s0093g00580.t01 Wine grape cytosol 81.7 83.13
KRH27542 Soybean cytosol 80.77 82.41
KRH36433 Soybean cytosol 80.37 81.89
AT1G66340.1 Thale cress plasma membrane 79.44 81.17
CDY07498 Canola cytosol 79.18 81.11
CDY49633 Canola cytosol 79.05 81.09
Bra004160.1-P Field mustard cytosol 79.05 80.98
PGSC0003DMT400081399 Potato cytosol, plasma membrane, vacuole 56.37 66.93
CDY49629 Canola cytosol 11.54 62.59
CDY66567 Canola cytosol 11.67 60.27
PGSC0003DMT400041983 Potato plasma membrane 38.2 37.84
PGSC0003DMT400073847 Potato plasma membrane 37.67 37.03
PGSC0003DMT400060160 Potato endoplasmic reticulum 35.81 35.39
PGSC0003DMT400044244 Potato plasma membrane 35.01 35.06
PGSC0003DMT400084727 Potato cytosol, golgi, plasma membrane 13.0 18.22
PGSC0003DMT400075775 Potato endoplasmic reticulum, golgi, plasma membrane 22.28 16.94
PGSC0003DMT400015729 Potato cytosol 7.82 16.03
PGSC0003DMT400075949 Potato cytosol 21.49 15.98
PGSC0003DMT400011818 Potato extracellular, golgi, peroxisome 13.4 13.19
PGSC0003DMT400009219 Potato plastid 18.04 11.23
Protein Annotations
Gene3D:1.10.287.130EntrezGene:102588584MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10Gene3D:3.40.50.2300
InterPro:CheY-like_superfamilyInterPro:ETRInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004673GO:GO:0004871GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0010105GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0016772GO:GO:0018106
GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0038199GO:GO:0046872GO:GO:0050896
GO:GO:0051740InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_dom
InterPro:IPR001789InterPro:IPR005467InterPro:IPR029016InterPro:IPR036890UniProt:M1AD87PFAM:PF00072
PFAM:PF00512PFAM:PF01590PFAM:PF02518EnsemblPlantsGene:PGSC0003DMG400007843PGSC:PGSC0003DMG400007843EnsemblPlants:PGSC0003DMT400020285
PIRSF:PIRSF026389PRINTS:PR00344PFscan:PS50109PFscan:PS50110PANTHER:PTHR24423PANTHER:PTHR24423:SF598
SMART:SM00065SMART:SM00387SMART:SM00388SMART:SM00448SUPFAM:SSF47384SUPFAM:SSF52172
SUPFAM:SSF55781SUPFAM:SSF55874InterPro:Sig_transdc_His_kin-like_CInterPro:Sig_transdc_resp-reg_receiverTMHMM:TMhelixUniParc:UPI000295602B
RefSeq:XP_006349996.1SEG:seg::::
Description
Ethylene receptor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400007843]
Coordinates
chr12:-:1111718..1121848
Molecular Weight (calculated)
84175.9 Da
IEP (calculated)
8.147
GRAVY (calculated)
0.177
Length
754 amino acids
Sequence
(BLAST)
001: MGSLLRMNRL LSSIVESCNC IIDPQLPADD LLMKYQYISD FFIALAYFSI PVELIYFVKK SAVFPYRWVL VQFGAFIVLC GATHLINLWT FNMHTRNVAI
101: VMTTAKALTA LVSCVTALML VHIIPDLLSV KTRELFLKKK AAQLDREMGI IRTQEETGRH VRMLTHEIRS TLDRHTILKT TLVELGKTLT LEECALWMPT
201: RPGLELQLSY TLRHQNPVGL TVPIQLPVIN QVFGTNHVVK ISPNSPVAKL RPAGKYMPGE VVAVRVPLLH LSNFQINDWP ELSTKRYALM VLMLPSDSAR
301: QWHVHELELV EVVADQVAVA LSHAAILEES MRARDLLMEQ NVALDLARRE AEMAVRARND FLAVMNHEMR TPMHAIIALS SLLQETDLTP EQRLMVETIL
401: KSSNLLATLI NDVLDLSRLE DGSLQLDIGT FNLHALFREV LSLIKPIASV KKLFVTLSLS SDLREYVIGD EKRLMQILLN VVGNAVKFSK EGSVSISAFV
501: AKSDSLRDPR APEFFTVPSE NHFYLRVQIK DTGIGITPQD IPNLFSKFTQ SQALATTNSG GTGLGLAICK RFVNLMEGHI WIESEGLGKG STAIFIIKLG
601: IPGRANDSKL PFVTKLPANH MQMSFQGLKV LVMDENGVSR MVTKGLLTHL GCDVTTVGSR DECLRVVTHE HKVVFMDVSM QGINCYEVAV VIHERFGKRH
701: GRPLIVALTG NTDRVTKENC MRVGMDGVIL KPVSVDKMRS VLSELLEHGV VLES
Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)
001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM
Arabidopsis Description
ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.