Factsheet for PGSC0003DMT400011818

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, peroxisome
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021612
PGSC0003DMT400051833	plasma membrane
PGSC0003DMT400081747	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47430.1	PGSC0003DMT400081747	AT3G21510.1	21569135
AT2G47430.1	PGSC0003DMT400051833	AT3G29350.1	10930573
AT2G47430.1	PGSC0003DMT400051833	AT3G29350.1	21569135
AT2G47430.1	PGSC0003DMT400021612	AT5G03730.1	9560288

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099720.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	89.56	92.7
Zm00001d012994_P001	Maize	extracellular, golgi, vacuole	32.25	33.61
TraesCS4A01G340900.1	Wheat	endoplasmic reticulum, golgi	32.11	33.52
VIT_07s0005g01380.t01	Wine grape	plasma membrane	47.65	33.36
TraesCS5B01G533800.1	Wheat	endoplasmic reticulum, golgi	31.72	33.11
KRH68254	Soybean	cytosol	43.34	31.44
EER94128	Sorghum	extracellular, plasma membrane	30.42	31.36
KXG26059	Sorghum	endoplasmic reticulum, extracellular, golgi	22.45	30.39
CDX80103	Canola	endoplasmic reticulum, golgi, plasma membrane	40.86	28.12
Bra032761.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	38.12	28.1
CDY55381	Canola	endoplasmic reticulum, plasma membrane, plastid	40.99	27.5
AT2G47430.1	Thale cress	plasma membrane	39.82	27.18
CDY01193	Canola	endoplasmic reticulum, golgi, plasma membrane	37.6	26.97
CDY12735	Canola	endoplasmic reticulum, golgi, plasma membrane	37.47	26.95
GSMUA_Achr3P22920_001	Banana	extracellular	33.42	26.67
TraesCS7D01G148400.1	Wheat	endoplasmic reticulum, plasma membrane	30.29	25.3
Zm00001d035846_P001	Maize	extracellular	32.77	24.23
TraesCS7D01G148100.1	Wheat	plasma membrane	33.29	23.57
KXG19481	Sorghum	plasma membrane	33.55	23.56
TraesCS7A01G146600.1	Wheat	plasma membrane	33.16	23.5
Os06t0183200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	31.72	23.19
PGSC0003DMT400015729	Potato	cytosol	11.1	23.1
TraesCS7D01G148700.1	Wheat	peroxisome, plasma membrane, plastid	28.98	23.05
TraesCS7B01G049100.1	Wheat	plasma membrane	32.77	22.76
HORVU7Hr1G030040.2	Barley	extracellular	30.55	22.61
TraesCS7B01G049400.1	Wheat	plasma membrane	29.63	21.72
PGSC0003DMT400075775	Potato	endoplasmic reticulum, golgi, plasma membrane	19.84	15.32
PGSC0003DMT400009219	Potato	plastid	23.5	14.86
PGSC0003DMT400071109	Potato	cytosol, endoplasmic reticulum, plasma membrane	13.19	13.72
PGSC0003DMT400020285	Potato	endoplasmic reticulum, plasma membrane, plastid	13.19	13.4
PGSC0003DMT400075949	Potato	cytosol	16.84	12.72
PGSC0003DMT400081399	Potato	cytosol, plasma membrane, vacuole	9.92	11.97
PGSC0003DMT400044244	Potato	plasma membrane	9.92	10.09
PGSC0003DMT400041983	Potato	plasma membrane	9.66	9.72
PGSC0003DMT400073847	Potato	plasma membrane	9.4	9.39
PGSC0003DMT400060160	Potato	endoplasmic reticulum	9.14	9.17
PGSC0003DMT400084727	Potato	cytosol, golgi, plasma membrane	5.61	7.99

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:102601159	MapMan:11.4.2.3	Gene3D:3.30.565.10	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily
ncoils:Coil	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0016772	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023
InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom	InterPro:IPR001789	InterPro:IPR005467
InterPro:IPR036890	UniProt:M1A085	PFAM:PF00072	PFAM:PF02518	PFAM:PF10247	EnsemblPlantsGene:PGSC0003DMG400004643
PGSC:PGSC0003DMG400004643	EnsemblPlants:PGSC0003DMT400011818	PRINTS:PR00344	PFscan:PS50109	PFscan:PS50110	PANTHER:PTHR43719
InterPro:Romo1/Mgr2	SMART:SM00387	SMART:SM00448	SMART:SM01378	SUPFAM:SSF47384	SUPFAM:SSF52172
SUPFAM:SSF55874	InterPro:Sig_transdc_His_kin-like_C	InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	UniParc:UPI0002949147	SEG:seg

Description

Histidine kinase 1 plant [Source:PGSC_GENE;Acc:PGSC0003DMG400004643]

Coordinates

chr12:+:60313883..60322789

Molecular Weight (calculated)

85787.2 Da

IEP (calculated)

7.207

GRAVY (calculated)

-0.309

Length

766 amino acids

Sequence
(BLAST)

001: MARDSCLARV TAGVAVGGAI GGAVGAVYGT YEAVRYKVYN VQDVLQRDYH KNIKFGFMLI ILMIVVLAIS IVTFVILTIR AARREMYLCS ALIKQMEATQ
101: QAERKSMNKS TASARANHDV RASLAGISGL IWMCRVQASP QSELVKYLDH MESCKNDLLD ILNSILDENK IEEGKKQLKE EEFNMEELLE HVVNIYYPNG
201: AMKNVDVLLD PCDGSIARFS RVKGDRIELQ RILNNLLQNA DKFTSSGHIT LRAWARKPGF EESSNLALNT SNSSIGCMPC LRLQNDESSA EVRVLNRVQQ
301: DPNCVEFIFE VDDTGKGIPK EKQKSVFENY VQVNDQTTSV HGSQAGTGLG LSITQSLVRL MGGEIGIVDK KIGEKGTCFR FNIFLIASDQ PQHQEHQAIS
401: VNCAKEEDLE SQLGGDYISN DSYYHSVASD NSITSHQKSN VILFIKEEER SRVLRRFIMN VLGLKVHVVN RHEQFPQTLK KVKGKITNSS SSSCKSKEIP
501: LSALDGTDID ISSFQRRGRG LRFILIIIDT SDGLTREMSR AMAELRKDFP NNVSLRVVWI DKPGVDEDKL PSTDIVITKP LHGSRLYRVL KFTHDETTSR
601: IKIQQHPSVQ DVSVDVNGRS NKKLPLTGKK ILVVEDDRML LMICKTAVSR LGATTYTCKN GQEALDEVCK GLSEQRGIGP STPSPPFDYI LMDCEMPEMD
701: GFEATKCIRK EEARYGIRIP IIAFTAHTEK EETDKIFQAG MDYYLPKESK GEEILKAIDY IEHTKV

Best Arabidopsis Sequence Match ( AT2G47430.1 )
(BLAST)

0001: MMVKVTKLVA SRPIVVFCVL AFLVVVFECI WISNWRTTTE NLVKEVASFT EDLRTSLVSE IENIGKFTYA KTNLSTIGLA RVIDSYITNN DTGFTEIQTQ
0101: IAPLLFVAYS TILQVSQVSY ISRDGLMFSY IAESNTSVAV FANSSSNSSR GDYTWYTQTV DQLTGRLNGN STKSQSLDVT HTDWFQAAQS NNYTTAFVGT
0201: SLGGEDNETL IQSVVSLYSK KGLVSLGFPV KTLTEVLNSL NLHGEELYMW TKDGTVLVRE GSLNDSFFIS NGSICFGRES NSLWSQCIPE NCSSSGYEVE
0301: IKRLRYQAFC SVIEVSGVPL RYTLMFPNKG GATRIKHQAE KAKYQLIVVM IFLGFGWPVW FVWFMMQATR REMHMRATLI NQMEATQQAE RKSMNKSQAF
0401: ANASHDIRGA LAGMKGLIDI CRDGVKPGSD VDTTLNQVNV CAKDLVALLN SVLDMSKIES GKMQLVEEDF NLSKLLEDVI DFYHPVAMKK GVDVVLDPHD
0501: GSVFKFSNVR GDSGRLKQIL NNLVSNAVKF TVDGHIAVRA WAQRPGSNSS VVLASYPKGV SKFVKSMFCK NKEESSTYET EISNSIRNNA NTMEFVFEVD
0601: DTGKGIPMEM RKSVFENYVQ VRETAQGHQG TGLGLGIVQS LVRLMGGEIR ITDKAMGEKG TCFQFNVLLT TLESPPVSDM KVRQEIEAGG DYVSTPNLGL
0701: TINTSLGGSM NIRNLSPRFN NCLSSSPKQE GSRVVLLLKN EERRRVTEKY IKNLGIKVTV VEKWEHLSYA LERLFGFSPQ SSMGRAECSL SCPSSRELPF
0801: IGMDGIDSRS QLPKRRSISF SAVVLLVIDA KTGPFFELCD IVKQFRRGLP HGISCKVVWL NESSTRVSER GDISCSRPLH GSRLMEVLKM LPEFGGTVLK
0901: EPPTELQRES LLRHSFVAER SPKHKVQEEG PSSMFNKKLG KRIMASTDSE SETRVKSVRT GRKPIGNPED EQETSKPSDD EFLRGKRVLV VDDNFISRKV
1001: ATGKLKKMGV SEVEQCDSGK EALRLVTEGL TQREEQGSVD KLPFDYIFMD CQMPEMDGYE ATREIRKVEK SYGVRTPIIA VSGHDPGSEE ARETIQAGMD
1101: AFLDKSLNQL ANVIREIESK RH

Arabidopsis Description

CKI1Histidine kinase CKI1 [Source:UniProtKB/Swiss-Prot;Acc:O22267]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.