Factsheet for VIT_07s0005g01380.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02210.t01	plasma membrane
VIT_07s0104g00880.t01	plasma membrane
VIT_08s0007g03910.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47430.1	VIT_05s0020g02210.t01	AT3G21510.1	21569135
AT2G47430.1	VIT_07s0104g00880.t01	AT3G29350.1	10930573
AT2G47430.1	VIT_07s0104g00880.t01	AT3G29350.1	21569135
AT2G47430.1	VIT_08s0007g03910.t01	AT5G03730.1	9560288

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68254	Soybean	cytosol	48.08	49.81
Solyc12g099720.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	32.45	47.97
PGSC0003DMT400011818	Potato	extracellular, golgi, peroxisome	33.36	47.65
Bra032761.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	39.49	41.58
AT2G47430.1	Thale cress	plasma membrane	41.96	40.91
CDY12735	Canola	endoplasmic reticulum, golgi, plasma membrane	39.4	40.47
CDX80103	Canola	endoplasmic reticulum, golgi, plasma membrane	41.13	40.43
CDY01193	Canola	endoplasmic reticulum, golgi, plasma membrane	39.31	40.26
CDY55381	Canola	endoplasmic reticulum, plasma membrane, plastid	41.5	39.75
EER94128	Sorghum	extracellular, plasma membrane	25.23	37.15
Zm00001d012994_P001	Maize	extracellular, golgi, vacuole	24.31	36.19
TraesCS4A01G340900.1	Wheat	endoplasmic reticulum, golgi	24.13	35.97
TraesCS5B01G533800.1	Wheat	endoplasmic reticulum, golgi	23.4	34.88
KXG26059	Sorghum	endoplasmic reticulum, extracellular, golgi	17.46	33.75
GSMUA_Achr3P22920_001	Banana	extracellular	29.25	33.33
Os06t0183200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	27.88	29.1
Zm00001d035846_P001	Maize	extracellular	27.42	28.96
TraesCS7D01G148400.1	Wheat	endoplasmic reticulum, plasma membrane	24.04	28.68
KXG19481	Sorghum	plasma membrane	28.43	28.51
TraesCS7D01G148100.1	Wheat	plasma membrane	27.42	27.73
TraesCS7A01G146600.1	Wheat	plasma membrane	27.15	27.47
TraesCS7B01G049100.1	Wheat	plasma membrane	27.42	27.2
TraesCS7D01G148700.1	Wheat	peroxisome, plasma membrane, plastid	23.67	26.9
TraesCS7B01G049400.1	Wheat	plasma membrane	25.41	26.6
HORVU7Hr1G030040.2	Barley	extracellular	23.22	24.54
VIT_04s0023g03680.t01	Wine grape	mitochondrion	22.49	19.92
VIT_04s0008g03460.t01	Wine grape	plastid	5.94	19.35
VIT_01s0011g06190.t01	Wine grape	mitochondrion	17.09	17.83
VIT_04s0069g00750.t01	Wine grape	nucleus	13.62	17.61
VIT_01s0010g03780.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	16.45	17.32
VIT_19s0093g00580.t01	Wine grape	cytosol	10.79	15.92
VIT_07s0005g00850.t01	Wine grape	cytosol	8.96	15.41
VIT_14s0081g00630.t01	Wine grape	plasma membrane	10.6	15.26
VIT_05s0049g00090.t01	Wine grape	plasma membrane	9.6	13.74
VIT_12s0057g00690.t01	Wine grape	endoplasmic reticulum, golgi	15.81	13.6
VIT_06s0004g05240.t01	Wine grape	endoplasmic reticulum, plasma membrane	4.94	9.8

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:100241920	wikigene:100241920	MapMan:11.4.2.3	Gene3D:3.30.565.10	Gene3D:3.40.50.2300
EMBL:AM456916	ProteinID:CAN78916	ProteinID:CAN78916.1	ProteinID:CCB60010	ProteinID:CCB60010.1	InterPro:CheY-like_superfamily
ncoils:Coil	UniProt:F6HZ95	EMBL:FN596502	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674
GO:GO:0003824	GO:GO:0004673	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009553	GO:GO:0009987
GO:GO:0010087	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0016772	GO:GO:0018106	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0040007
GO:GO:0042803	GO:GO:0080117	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf
InterPro:His_kinase_dom	InterPro:IPR001789	InterPro:IPR005467	InterPro:IPR036890	EntrezGene:LOC100241920	wikigene:LOC100241920
PFAM:PF00072	PFAM:PF02518	PRINTS:PR00344	PFscan:PS50109	PFscan:PS50110	PANTHER:PTHR43711
PANTHER:PTHR43711:SF1	SMART:SM00387	SMART:SM00388	SMART:SM00448	SUPFAM:SSF47384	SUPFAM:SSF52172
SUPFAM:SSF55874	InterPro:Sig_transdc_His_kin-like_C	InterPro:Sig_transdc_resp-reg_receiver	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000210832C
ArrayExpress:VIT_07s0005g01380	EnsemblPlantsGene:VIT_07s0005g01380	EnsemblPlants:VIT_07s0005g01380.t01	RefSeq:XP_002270319	RefSeq:XP_002270319.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:3901920..3906466

Molecular Weight (calculated)

120683.0 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.169

Length

1094 amino acids

Sequence
(BLAST)

0001: MQAFLVLLLP SVVIPLWYDT IKKIEHDAKL SSQKLHTELL SEIKSTAELV HPMNASAMNL ARVLNASVSG MKLPFSEIKN RVAPMLFQAL SITPHVSQIS
0101: YIGIDGLLFS YYAHGSEIFA LYSNSSISVN SSSPNATAYT WYIQRADSDT GKLYGKVITS PPLVVVNASW FEEAMNSTNG YSSLGTEWNS VQDLFLNTAK
0201: VDGRGAVSLG FPVKEVTDFL SVIDLHDGSL CLATEDNKVL IEGLPNTQIM VSNDSISFKV VENQDGDQIS HVGNVSCKAD DRTPKASVLN ISNKDYVVYC
0301: SQLEIMGVKS VYALAFPYRG LESRVHKSSR SALILHIVMV VIMVILVSMF MFLLVGAARR EMYLRAKLIK QMDATQQAER KSMNKSLAFA SASHDVRASL
0401: AGLTGLIDIS KDEVAPGSEI ETNLIQMEGC TKDLLGILNS ILDTSKIEAG KMQLEEEEFN LEELLEDVVD LYHPVGMKKG VDVVLDPHDG SVAKFSRVKG
0501: DRMKLKQVLC NLLSNAVKFT SEGHVSIRAW AKKPSSESSV LASSQKSMLN RLWSFFCKNN EAFKDLEASN KVQKNPNCME FVFEVDDTGK GVPKEKQKSV
0601: FENYVQVKET ALGTGGTGLG LGIVQSLVRL MGGDIGIVDK EIGAKGTCFR FNIFLTTCDT VPSDHGKEED IEAQGHATSS YSYQPLDLRI QSTCNPGLNI
0701: LTSPRPSPRA EGSHVIILMQ SDERRRITQR LFETLGIKVS VLKEWERFLY ALKKIRRKVS LSHRSSSGIS EFSPRSFRSG SFSSNAGPKD MPLSAMDGTD
0801: LTLPTPRKTY ARGTPRFILI LIEATAGPFP ELCRAVAEFR KDLQNTCCRA VWLDKPTLRS VNFRDVPEEM ISPNDLVMLK PFHGSRLYQV AKLLPEFGGP
0901: MLGISAISQV GKAGPEPSLS SLPTTNRTTP RKSRSRVRLV KEPEIQEVGT SSNQNPLRGK RVLIAEDSMV LCKLATAHVT RLGGTVEACD NGAKAVELVC
1001: NGLRNNTKNN ASIILPYDYI LMDCEMPEMD GYEATKRIRE EEQQYGVHIP IIALTAHANG EEAKRTIEAG MDYHLSKPLK RETLMGAIEY TNSR

Best Arabidopsis Sequence Match ( AT2G47430.1 )
(BLAST)

0001: MMVKVTKLVA SRPIVVFCVL AFLVVVFECI WISNWRTTTE NLVKEVASFT EDLRTSLVSE IENIGKFTYA KTNLSTIGLA RVIDSYITNN DTGFTEIQTQ
0101: IAPLLFVAYS TILQVSQVSY ISRDGLMFSY IAESNTSVAV FANSSSNSSR GDYTWYTQTV DQLTGRLNGN STKSQSLDVT HTDWFQAAQS NNYTTAFVGT
0201: SLGGEDNETL IQSVVSLYSK KGLVSLGFPV KTLTEVLNSL NLHGEELYMW TKDGTVLVRE GSLNDSFFIS NGSICFGRES NSLWSQCIPE NCSSSGYEVE
0301: IKRLRYQAFC SVIEVSGVPL RYTLMFPNKG GATRIKHQAE KAKYQLIVVM IFLGFGWPVW FVWFMMQATR REMHMRATLI NQMEATQQAE RKSMNKSQAF
0401: ANASHDIRGA LAGMKGLIDI CRDGVKPGSD VDTTLNQVNV CAKDLVALLN SVLDMSKIES GKMQLVEEDF NLSKLLEDVI DFYHPVAMKK GVDVVLDPHD
0501: GSVFKFSNVR GDSGRLKQIL NNLVSNAVKF TVDGHIAVRA WAQRPGSNSS VVLASYPKGV SKFVKSMFCK NKEESSTYET EISNSIRNNA NTMEFVFEVD
0601: DTGKGIPMEM RKSVFENYVQ VRETAQGHQG TGLGLGIVQS LVRLMGGEIR ITDKAMGEKG TCFQFNVLLT TLESPPVSDM KVRQEIEAGG DYVSTPNLGL
0701: TINTSLGGSM NIRNLSPRFN NCLSSSPKQE GSRVVLLLKN EERRRVTEKY IKNLGIKVTV VEKWEHLSYA LERLFGFSPQ SSMGRAECSL SCPSSRELPF
0801: IGMDGIDSRS QLPKRRSISF SAVVLLVIDA KTGPFFELCD IVKQFRRGLP HGISCKVVWL NESSTRVSER GDISCSRPLH GSRLMEVLKM LPEFGGTVLK
0901: EPPTELQRES LLRHSFVAER SPKHKVQEEG PSSMFNKKLG KRIMASTDSE SETRVKSVRT GRKPIGNPED EQETSKPSDD EFLRGKRVLV VDDNFISRKV
1001: ATGKLKKMGV SEVEQCDSGK EALRLVTEGL TQREEQGSVD KLPFDYIFMD CQMPEMDGYE ATREIRKVEK SYGVRTPIIA VSGHDPGSEE ARETIQAGMD
1101: AFLDKSLNQL ANVIREIESK RH

Arabidopsis Description

CKI1Histidine kinase CKI1 [Source:UniProtKB/Swiss-Prot;Acc:O22267]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.