Factsheet for VIT_07s0104g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03780.t01
VIT_01s0026g00940.t01
VIT_04s0008g03460.t01
VIT_04s0023g03680.t01
VIT_05s0020g04170.t01
VIT_07s0005g01380.t01
VIT_08s0007g05390.t01
VIT_11s0016g00340.t01
VIT_11s0016g02770.t01
VIT_12s0057g00690.t01
VIT_17s0000g07580.t01
VIT_19s0093g00580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29350.1	VIT_01s0026g00940.t01	AT1G10470.1	16965536
AT3G29350.1	VIT_17s0000g07580.t01	AT1G19050.1	16965536
AT3G29350.1	VIT_17s0000g07580.t01	AT1G19050.1	18642946
AT3G29350.1	VIT_17s0000g07580.t01	AT1G19050.1	21798944
AT3G29350.1	VIT_01s0010g03780.t01	AT1G27320.1	16965536
AT3G29350.1	VIT_04s0008g03460.t01	AT1G27320.1	16965536
AT3G29350.1	VIT_19s0093g00580.t01	AT1G66340.1	10930573
AT3G29350.1	VIT_04s0023g03680.t01	AT2G17820.1	10930573
AT3G29350.1	VIT_08s0007g05390.t01	AT2G41310.1	16965536
AT3G29350.1	VIT_07s0005g01380.t01	AT2G47430.1	10930573
AT3G29350.1	VIT_05s0020g04170.t01	AT3G22880.1	17937504
AT3G29350.1	VIT_17s0000g07580.t01	AT3G48100.1	16965536
AT3G29350.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946
AT3G29350.1	VIT_08s0007g05390.t01	AT3G57040.1	10930573
AT3G29350.1	VIT_08s0007g05390.t01	AT3G57040.1	16965536
AT3G29350.1	VIT_08s0007g05390.t01	AT3G57040.1	18642946
AT3G29350.1	VIT_11s0016g02770.t01	AT4G29170.1	17937504
AT3G29350.1	VIT_11s0016g00340.t01	AT5G20850.1	17937504
AT3G29350.1	VIT_12s0057g00690.t01	AT5G35750.1	16965536
AT3G29350.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g02210.t01	Wine grape	cytosol	72.85	72.37
VIT_14s0030g00410.t01	Wine grape	cytosol	70.86	71.33
PGSC0003DMT400051833	Potato	cytosol	71.52	71.05
GSMUA_Achr11P...	Banana	cytosol	67.55	67.55
Solyc06g084410.2.1	Tomato	cytosol	53.64	67.5
KRH31957	Soybean	cytosol	66.89	66.45
KRG95451	Soybean	cytosol	57.62	66.41
KRH71497	Soybean	cytosol, mitochondrion, nucleus	66.23	65.79
CDX74472	Canola	cytosol	66.23	64.52
CDY37867	Canola	cytosol	65.56	63.87
KRH67127	Soybean	cytosol	36.42	62.5
Bra033398.1-P	Field mustard	cytosol	63.58	61.54
AT3G29350.1	Thale cress	cytosol	62.91	60.9
CDX86370	Canola	cytosol	62.25	60.26
CDX85268	Canola	cytosol	62.25	60.26
Bra025394.1-P	Field mustard	cytosol	62.25	60.26
CDY00096	Canola	cytosol	60.93	58.97
CDY19992	Canola	cytosol	60.93	58.97
Bra036215.1-P	Field mustard	cytosol	60.93	58.97
CDY71948	Canola	cytosol	11.26	58.62
CDX89890	Canola	cytosol	62.91	55.88
AT1G03430.2	Thale cress	cytosol	56.95	54.78
GSMUA_Achr7P14570_001	Banana	cytosol	54.3	53.95
Bra028236.1-P	Field mustard	cytosol	60.93	51.69
GSMUA_AchrUn_...	Banana	cytosol	51.66	51.32
GSMUA_Achr7P14620_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.33	50.0
VIT_09s0002g06960.t01	Wine grape	cytosol	49.01	47.44
AT5G39340.2	Thale cress	extracellular, plasma membrane	63.58	47.06
VIT_09s0002g03520.t01	Wine grape	nucleus	45.03	45.33
AT4G04402.1	Thale cress	extracellular	43.71	39.52
VIT_04s0008g00210.t01	Wine grape	mitochondrion	47.02	38.38
VIT_13s0074g00740.t01	Wine grape	cytosol	29.14	29.93
VIT_11s0016g03170.t01	Wine grape	cytosol	39.07	27.57

Protein Annotations

Gene3D:1.20.120.160	EntrezGene:100261357	wikigene:100261357	MapMan:11.4.2.2	ProteinID:CBI32302	ProteinID:CBI32302.3
ncoils:Coil	UniProt:D7TP79	EMBL:FN596005	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009736	GO:GO:0009927	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0043424	InterPro:HPT_dom_sf
InterPro:IPR008207	InterPro:IPR036641	EntrezGene:LOC100261357	wikigene:LOC100261357	PFAM:PF01627	PFscan:PS50894
PANTHER:PTHR28242	PANTHER:PTHR28242:SF24	SUPFAM:SSF47226	InterPro:Sig_transdc_His_kin_Hpt_dom	TIGR:TC56311	TIGR:TC57027
UniParc:UPI00015CAEB1	ArrayExpress:VIT_07s0104g00880	EnsemblPlantsGene:VIT_07s0104g00880	EnsemblPlants:VIT_07s0104g00880.t01	RefSeq:XP_002272153	RefSeq:XP_002272153.2

Description

No Description!

Coordinates

chr7:+:2012594..2017260

Molecular Weight (calculated)

17443.7 Da

IEP (calculated)

5.245

GRAVY (calculated)

-0.418

Length

151 amino acids

Sequence
(BLAST)

001: MDVGQLQRQF TDYTASLFRE GFLDDQFTQL QKLQDENNPD FVFEVVSLFF DDSEKLVNNM AKALEQQTVE FKQVDAHVHQ FKGSSSSIGA HRVKNVCVTF
101: RNFCEQQNIE GCKRCLQQLR HEYSLLKSKL ETLFRLEQQI IAAGGSIPMV E

Best Arabidopsis Sequence Match ( AT3G21510.1 )
(BLAST)

001: MDLVQKQKSL QDYTKSLFLE GILDSQFLQL QQLQDESNPD FVSQVVTLFF QDSDRILNDL SLSLDQQVVD FKKVDPHVHQ LKGSSSSIGA QRVKNACVVF
101: RSFCEQQNVE ACHRCLQQVK QEYYLVKNRL ETLFKLEQQI VASGGMIPAV ELGF

Arabidopsis Description

AHP1AHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V856]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.