Factsheet for VIT_09s0002g06960.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44466	Soybean	extracellular	92.31	92.31
KRH47442	Soybean	extracellular	91.67	91.67
Solyc03g116720.1.1	Tomato	cytosol	67.31	91.3
KRH09720	Soybean	extracellular	86.54	87.66
PGSC0003DMT400001706	Potato	cytosol	83.33	83.87
Bra003551.1-P	Field mustard	cytosol	81.41	82.47
CDY57687	Canola	cytosol	81.41	82.47
CDY54309	Canola	cytosol	80.77	81.82
AT1G80100.3	Thale cress	cytosol, extracellular, nucleus	76.92	75.0
VIT_14s0030g00410.t01	Wine grape	cytosol	48.72	50.67
VIT_07s0104g00880.t01	Wine grape	cytosol, nucleus, plastid	47.44	49.01
VIT_05s0020g02210.t01	Wine grape	cytosol	46.79	48.03
VIT_09s0002g03520.t01	Wine grape	nucleus	33.97	35.33
VIT_13s0074g00740.t01	Wine grape	cytosol	30.77	32.65
VIT_04s0008g00210.t01	Wine grape	mitochondrion	35.26	29.73
VIT_11s0016g03170.t01	Wine grape	cytosol	28.21	20.56

Protein Annotations

Gene3D:1.20.120.160	EntrezGene:100243922	wikigene:100243922	MapMan:11.4.2.2	ProteinID:ACO88940	ProteinID:ACO88940.1
ProteinID:CBI36332	ProteinID:CBI36332.3	UniProt:D7U136	EMBL:FJ822979	EMBL:FN596494	GO:GO:0000160
GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009736
GO:GO:0009927	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
GO:GO:0043424	EntrezGene:HP4	wikigene:HP4	InterPro:HPT_dom_sf	InterPro:IPR036641	PANTHER:PTHR28242
PANTHER:PTHR28242:SF1	SUPFAM:SSF47226	UniParc:UPI00015CCFB4	ArrayExpress:VIT_09s0002g06960	EnsemblPlantsGene:VIT_09s0002g06960	EnsemblPlants:VIT_09s0002g06960.t01
unigene:Vvi.25978	RefSeq:XP_002265443	RefSeq:XP_002265443.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:6866970..6868378

Molecular Weight (calculated)

18028.8 Da

IEP (calculated)

8.086

GRAVY (calculated)

-0.288

Length

156 amino acids

Sequence
(BLAST)

001: MLGLGADRLR ADMNRLLALL FHQGVLDEQF LQLQQLQDET SPNFVSEVVN IYFHESEKLL RNLRGLLMDR EFSDYKKMGI HLNQFMGSSS SIGAKRVRNV
101: CVAFRAASEQ NNRAGCLRAL ELVEHEYCYL KNKLHELFQL EQQRVLAAGV RYPIQN

Best Arabidopsis Sequence Match ( AT1G80100.1 )
(BLAST)

001: MLGLGVDRLQ ADINRLLASL FHQGVLDEQF LQLQQLQDET SPNFVYDVIN IYFDESEKLL RNLRLLLMDR EFSDYKKIGL HLNQLVGSSS SIGARRVRNV
101: CVAFRSASEL SNRPGCLRGL EVVEHEYHYL KNMMHELFQL EQQRILAAGV RYPM

Arabidopsis Description

AHP6histidine phosphotransfer protein 6 [Source:TAIR;Acc:AT1G80100]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.