Factsheet for VIT_05s0020g02210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03780.t01
VIT_01s0026g00940.t01
VIT_04s0008g03460.t01
VIT_08s0007g05390.t01
VIT_12s0057g00690.t01
VIT_17s0000g07580.t01
VIT_19s0093g00580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21510.1	VIT_01s0026g00940.t01	AT1G10470.1	10930573
AT3G21510.1	VIT_01s0026g00940.t01	AT1G10470.1	16965536
AT3G21510.1	VIT_17s0000g07580.t01	AT1G19050.1	16965536
AT3G21510.1	VIT_17s0000g07580.t01	AT1G19050.1	18642946
AT3G21510.1	VIT_01s0010g03780.t01	AT1G27320.1	16965536
AT3G21510.1	VIT_04s0008g03460.t01	AT1G27320.1	16965536
AT3G21510.1	VIT_19s0093g00580.t01	AT1G66340.1	10930573
AT3G21510.1	VIT_19s0093g00580.t01	AT1G66340.1	18384742
AT3G21510.1	VIT_08s0007g05390.t01	AT2G41310.1	16965536
AT3G21510.1	VIT_08s0007g05390.t01	AT2G41310.1	18642946
AT3G21510.1	VIT_17s0000g07580.t01	AT3G48100.1	16965536
AT3G21510.1	VIT_08s0007g05390.t01	AT3G57040.1	10930573
AT3G21510.1	VIT_08s0007g05390.t01	AT3G57040.1	16965536
AT3G21510.1	VIT_12s0057g00690.t01	AT5G35750.1	16965536

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080540.2.1	Tomato	cytosol, nucleus, plastid	78.95	79.47
PGSC0003DMT400081747	Potato	cytosol, nucleus, plastid	78.29	78.81
KRH20965	Soybean	cytosol	79.61	78.06
KRH11296	Soybean	cytosol	79.61	78.06
KRH50948	Soybean	cytosol	78.29	76.77
VIT_14s0030g00410.t01	Wine grape	cytosol	74.34	75.33
GSMUA_Achr11P...	Banana	cytosol	72.37	72.85
VIT_07s0104g00880.t01	Wine grape	cytosol, nucleus, plastid	72.37	72.85
CDY37282	Canola	cytosol, nucleus, plastid	69.74	68.83
CDY19286	Canola	cytosol	69.74	68.83
Bra023876.1-P	Field mustard	cytosol, nucleus, plastid	69.74	68.83
AT3G21510.1	Thale cress	cytosol, nucleus, plastid	69.08	68.18
GSMUA_Achr7P14570_001	Banana	cytosol	58.55	58.55
GSMUA_Achr7P14620_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.92	55.92
GSMUA_AchrUn_...	Banana	cytosol	55.92	55.92
VIT_09s0002g06960.t01	Wine grape	cytosol	48.03	46.79
VIT_09s0002g03520.t01	Wine grape	nucleus	44.08	44.67
VIT_04s0008g00210.t01	Wine grape	mitochondrion	45.39	37.3
VIT_13s0074g00740.t01	Wine grape	cytosol	29.61	30.61
VIT_11s0016g03170.t01	Wine grape	cytosol	36.18	25.7

Protein Annotations

Gene3D:1.20.120.160	EntrezGene:100251055	wikigene:100251055	MapMan:11.4.2.2	ProteinID:ACO88939	ProteinID:ACO88939.1
ProteinID:CBI26141	ProteinID:CBI26141.3	UniProt:D7T6M0	EMBL:FJ822978	EMBL:FN595749	GO:GO:0000160
GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009736
GO:GO:0009927	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
GO:GO:0043424	EntrezGene:HP3	wikigene:HP3	InterPro:HPT_dom_sf	InterPro:IPR008207	InterPro:IPR036641
PFAM:PF01627	PFscan:PS50894	PANTHER:PTHR28242	PANTHER:PTHR28242:SF24	SUPFAM:SSF47226	InterPro:Sig_transdc_His_kin_Hpt_dom
TIGR:TC56524	UniParc:UPI00015C7E9C	ArrayExpress:VIT_05s0020g02210	EnsemblPlantsGene:VIT_05s0020g02210	EnsemblPlants:VIT_05s0020g02210.t01	unigene:Vvi.2958
RefSeq:XP_002278411	RefSeq:XP_002278411.1	RefSeq:XP_019075284.1	:	:	:

Description

No Description!

Coordinates

chr5:-:3943055..3944807

Molecular Weight (calculated)

17394.6 Da

IEP (calculated)

4.564

GRAVY (calculated)

-0.338

Length

152 amino acids

Sequence
(BLAST)

001: MEVVQMQRRF VEYAASLFRE GFLDGQFTQL QQLQDESNPD FVVEVVSLFF EDSEKLLNDL SRALDQQNVD FKRVDSHVHQ LKGSSSSIGA QRVKNACIAF
101: RNYCEEQNTD ACLSCLQQVK QEYSLAKSKL ETLFRLEQQI LTAGGSIPIM ME

Best Arabidopsis Sequence Match ( AT3G21510.1 )
(BLAST)

001: MDLVQKQKSL QDYTKSLFLE GILDSQFLQL QQLQDESNPD FVSQVVTLFF QDSDRILNDL SLSLDQQVVD FKKVDPHVHQ LKGSSSSIGA QRVKNACVVF
101: RSFCEQQNVE ACHRCLQQVK QEYYLVKNRL ETLFKLEQQI VASGGMIPAV ELGF

Arabidopsis Description

AHP1AHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V856]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.