Factsheet for VIT_11s0016g03170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g03520.t01	Wine grape	nucleus	32.71	46.67
GSMUA_Achr10P...	Banana	nucleus	28.97	41.06
Os01t0743800-00	Rice	cytosol, nucleus, plastid	28.97	41.06
GSMUA_Achr11P...	Banana	nucleus	28.97	40.79
Os05t0186100-01	Rice	nucleus	28.5	40.4
EES19834	Sorghum	cytosol, nucleus, plastid	28.97	40.26
TraesCS3B01G309100.1	Wheat	cytosol	28.04	39.74
TraesCS1B01G141500.1	Wheat	nucleus	28.04	39.74
VIT_07s0104g00880.t01	Wine grape	cytosol, nucleus, plastid	27.57	39.07
TraesCS3D01G275300.1	Wheat	cytosol	27.57	39.07
HORVU3Hr1G070880.7	Barley	cytosol	27.57	38.82
VIT_14s0030g00410.t01	Wine grape	cytosol	26.64	38.0
TraesCS1B01G354300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.64	37.5
TraesCS1D01G343900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.64	37.5
OQU77568	Sorghum	nucleus	26.17	37.09
TraesCS1A01G341600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.17	36.84
VIT_04s0008g00210.t01	Wine grape	mitochondrion	31.78	36.76
VIT_05s0020g02210.t01	Wine grape	cytosol	25.7	36.18
Zm00001d043505_P001	Maize	cytosol	28.97	34.83
Zm00001d037694_P001	Maize	cytosol	28.97	34.83
GSMUA_Achr9P16250_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.83	34.69
KRH74260	Soybean	cytosol	24.77	34.19
HORVU1Hr1G027980.32	Barley	mitochondrion	27.57	32.78
Zm00001d010791_P001	Maize	mitochondrion	25.23	31.58
OQU87518	Sorghum	cytosol	26.64	30.32
TraesCS3A01G275400.2	Wheat	extracellular, mitochondrion	24.77	29.28
VIT_09s0002g06960.t01	Wine grape	cytosol	20.56	28.21
TraesCS1D01G123300.1	Wheat	nucleus	21.03	27.95
TraesCS1A01G122300.1	Wheat	nucleus	21.03	27.95
VIT_13s0074g00740.t01	Wine grape	cytosol	16.82	24.49
HORVU1Hr1G075830.31	Barley	cytosol, mitochondrion, plastid	22.9	22.69

Protein Annotations

Gene3D:1.20.120.160	EntrezGene:100243875	EntrezGene:100254355	wikigene:100254355	MapMan:11.4.2.2	EMBL:AM431047
ProteinID:CAN71517	ProteinID:CAN71517.1	ProteinID:CBI28005	ProteinID:CBI28005.3	ncoils:Coil	UniProt:D7TBH0
EMBL:FN595756	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009719	GO:GO:0009736	GO:GO:0009927	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	GO:GO:0043424	InterPro:HPT_dom_sf	InterPro:IPR008207	InterPro:IPR036641
EntrezGene:LOC100243875	EntrezGene:LOC100254355	wikigene:LOC100254355	PFAM:PF01627	PFscan:PS50894	PANTHER:PTHR28242
PANTHER:PTHR28242:SF4	SUPFAM:SSF47226	InterPro:Sig_transdc_His_kin_Hpt_dom	TIGR:TC53117	UniParc:UPI00019842A6	ArrayExpress:VIT_11s0016g03170
EnsemblPlantsGene:VIT_11s0016g03170	EnsemblPlants:VIT_11s0016g03170.t01	unigene:Vvi.14273	RefSeq:XP_002283696	RefSeq:XP_002283696.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:2543892..2547079

Molecular Weight (calculated)

24192.9 Da

IEP (calculated)

5.236

GRAVY (calculated)

-0.592

Length

214 amino acids

Sequence
(BLAST)

001: MESTLHQQIS AMKQSLLDEG FVDGHFVELE LLEDGDNLHF TEEIITLFFT DSARLIVDVE KELNNDPIDY SKVDKILHQF KGSSSSVGAN RVRLQGTKLR
101: ESCKDGDVEG WKAALKQLKK EHATLKEKLD TYFQLVKQLG SEKKTVWHPN EGQVDMLAKN QLMKMAITKD EKVEFGHKED MVKKGTGKEP GKVVTEEEAV
201: KVVSDEESVQ MVAK

Best Arabidopsis Sequence Match ( AT3G16360.2 )
(BLAST)

001: MQRQVALIKQ SLFDQGYLDE QFMELEELQD DANPNFVEEV SALYFKDSAR LINNIDQALE RGSFDFNRLD SYMHQFKGSS TSIGASKVKA ECTTFREYCR
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK

Arabidopsis Description

AHP4AHP4 [Source:UniProtKB/TrEMBL;Acc:A0A178V965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.