Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0186100-01 | Rice | nucleus | 88.74 | 88.74 |
| HORVU1Hr1G027980.32 | Barley | mitochondrion | 98.01 | 82.22 |
| OQU77568 | Sorghum | nucleus | 78.15 | 78.15 |
| TraesCS1D01G123300.1 | Wheat | nucleus | 76.82 | 72.05 |
| TraesCS1A01G122300.1 | Wheat | nucleus | 76.82 | 72.05 |
| Zm00001d037694_P001 | Maize | cytosol | 81.46 | 69.1 |
| GSMUA_Achr11P... | Banana | nucleus | 68.21 | 67.76 |
| TraesCS3B01G309100.1 | Wheat | cytosol | 66.23 | 66.23 |
| GSMUA_Achr10P... | Banana | nucleus | 64.24 | 64.24 |
| TraesCS1B01G354300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 62.25 | 61.84 |
| KRH09934 | Soybean | nucleus | 58.94 | 59.33 |
| KRH47212 | Soybean | cytosol, nucleus, plastid | 55.63 | 58.74 |
| KRH23400 | Soybean | nucleus | 58.28 | 58.67 |
| GSMUA_Achr9P16250_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 56.95 | 58.5 |
| PGSC0003DMT400077451 | Potato | cytosol, nucleus, plastid | 50.99 | 56.62 |
| AT3G16360.2 | Thale cress | nucleus | 54.3 | 56.55 |
| CDX75878 | Canola | cytosol | 49.67 | 56.39 |
| CDX82406 | Canola | cytosol | 49.67 | 56.39 |
| Solyc11g070150.1.1 | Tomato | nucleus | 50.99 | 56.2 |
| PGSC0003DMT400047799 | Potato | nucleus | 50.33 | 55.47 |
| Solyc08g066350.1.1 | Tomato | cytosol, mitochondrion, nucleus | 49.67 | 55.15 |
| CDY30166 | Canola | cytosol | 48.34 | 54.89 |
| VIT_09s0002g03520.t01 | Wine grape | nucleus | 54.3 | 54.67 |
| CDY56195 | Canola | cytosol, nucleus, plastid | 44.37 | 54.03 |
| Bra027169.1-P | Field mustard | cytosol, nucleus, plastid | 44.37 | 54.03 |
| KRH52794 | Soybean | cytosol, nucleus, plastid | 48.34 | 51.05 |
| KRH44276 | Soybean | nucleus | 54.97 | 50.92 |
| Bra001629.1-P | Field mustard | cytosol | 43.05 | 47.79 |
| VIT_04s0008g00210.t01 | Wine grape | mitochondrion | 54.3 | 44.32 |
| KRH74260 | Soybean | cytosol | 35.1 | 34.19 |
| TraesCS4B01G010300.1 | Wheat | extracellular | 31.13 | 31.97 |
| TraesCS4B01G281000.1 | Wheat | plastid | 30.46 | 31.29 |
| TraesCS1B01G061500.1 | Wheat | cytosol | 29.14 | 30.77 |
| TraesCS1B01G061400.1 | Wheat | cytosol | 30.46 | 30.46 |
| TraesCS6B01G027800.1 | Wheat | extracellular | 28.48 | 29.05 |
| VIT_11s0016g03170.t01 | Wine grape | cytosol | 39.74 | 28.04 |
| TraesCS4B01G011700.1 | Wheat | cytosol | 25.83 | 27.27 |
| TraesCS5B01G378400.2 | Wheat | extracellular, vacuole | 29.8 | 25.86 |
| PGSC0003DMT400094075 | Potato | nucleus | 33.11 | 24.63 |
| TraesCS4B01G011600.1 | Wheat | mitochondrion, plastid | 29.14 | 23.4 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G141500.1 | EnsemblPlantsGene:TraesCS1B01G141500 | Gene3D:1.20.120.160 | GO:GO:0000160 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:HPT_dom_sf | InterPro:IPR008207 | InterPro:IPR036641 | InterPro:Sig_transdc_His_kin_Hpt_dom |
| ncoils:Coil | PANTHER:PTHR28242 | PANTHER:PTHR28242:SF11 | PFAM:PF01627 | PFscan:PS50894 | SUPFAM:SSF47226 |
| TIGR:cd00088 | MapMan:11.4.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:188904618..188906521
Molecular Weight (calculated)
17710.1 Da
IEP (calculated)
9.152
GRAVY (calculated)
-0.775
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSNLRRQI TFMKKSFFDQ GYLDEQFNQL EELQDESSPN FVEEVVALFL KDSPRLLSNI EQTIGKYPQD FYRLDSLVHQ LKGSGSSIGA VRMKNECSVF
101: KAHCNDRNLE GCRRSLQKMK REHATLKQKL ESYFQLLRQV GPREHAVNSR K
101: KAHCNDRNLE GCRRSLQKMK REHATLKQKL ESYFQLLRQV GPREHAVNSR K
001: MDTLIAQLQR RFCDFTISLY HQGFLDDQFT ELKKLQDECS PDFVAEVVTL FFEDCEKLIS NMARALDQTG NVDFKLVGSS VHQLKGSSSS VGAKRVKGLC
101: VTLKECCDSQ NYEGCVRCLQ QVDIEYKTLK AKLQDLFNLE QQIVQAGGRI PQVDI
101: VTLKECCDSQ NYEGCVRCLQ QVDIEYKTLK AKLQDLFNLE QQIVQAGGRI PQVDI
Arabidopsis Description
AHP3histidine-containing phosphotransmitter 3 [Source:TAIR;Acc:AT5G39340]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.