Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G122300.1 | Wheat | nucleus | 99.38 | 99.38 |
| TraesCS1B01G141500.1 | Wheat | nucleus | 72.05 | 76.82 |
| Os05t0186100-01 | Rice | nucleus | 63.35 | 67.55 |
| HORVU1Hr1G027980.32 | Barley | mitochondrion | 70.81 | 63.33 |
| OQU77568 | Sorghum | nucleus | 55.28 | 58.94 |
| GSMUA_Achr11P... | Banana | nucleus | 50.31 | 53.29 |
| TraesCS3D01G275300.1 | Wheat | cytosol | 49.07 | 52.32 |
| Zm00001d037694_P001 | Maize | cytosol | 57.76 | 52.25 |
| GSMUA_Achr10P... | Banana | nucleus | 47.2 | 50.33 |
| KRH47212 | Soybean | cytosol, nucleus, plastid | 42.86 | 48.25 |
| CDX82406 | Canola | cytosol | 39.75 | 48.12 |
| CDX75878 | Canola | cytosol | 39.75 | 48.12 |
| TraesCS1D01G343900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 45.34 | 48.03 |
| PGSC0003DMT400077451 | Potato | cytosol, nucleus, plastid | 40.37 | 47.79 |
| CDY30166 | Canola | cytosol | 39.13 | 47.37 |
| KRH23400 | Soybean | nucleus | 44.1 | 47.33 |
| KRH09934 | Soybean | nucleus | 43.48 | 46.67 |
| GSMUA_Achr9P16250_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 42.24 | 46.26 |
| Solyc11g070150.1.1 | Tomato | nucleus | 39.13 | 45.99 |
| PGSC0003DMT400047799 | Potato | nucleus | 39.13 | 45.99 |
| Solyc08g066350.1.1 | Tomato | cytosol, mitochondrion, nucleus | 38.51 | 45.59 |
| Bra001629.1-P | Field mustard | cytosol | 38.51 | 45.59 |
| AT3G16360.2 | Thale cress | nucleus | 40.99 | 45.52 |
| VIT_09s0002g03520.t01 | Wine grape | nucleus | 42.24 | 45.33 |
| CDY56195 | Canola | cytosol, nucleus, plastid | 34.16 | 44.35 |
| Bra027169.1-P | Field mustard | cytosol, nucleus, plastid | 34.16 | 44.35 |
| KRH44276 | Soybean | nucleus | 44.1 | 43.56 |
| KRH52794 | Soybean | cytosol, nucleus, plastid | 37.89 | 42.66 |
| VIT_04s0008g00210.t01 | Wine grape | mitochondrion | 42.86 | 37.3 |
| TraesCS4D01G009000.1 | Wheat | cytosol | 29.19 | 31.76 |
| KRH74260 | Soybean | cytosol | 30.43 | 31.61 |
| TraesCS7D01G012700.1 | Wheat | cytosol, extracellular | 25.47 | 31.3 |
| TraesCS6D01G023100.1 | Wheat | cytosol, extracellular | 24.84 | 30.3 |
| TraesCS4D01G279500.1 | Wheat | plastid | 27.33 | 29.93 |
| TraesCS4D01G009900.1 | Wheat | cytosol | 25.47 | 28.67 |
| TraesCS6D01G021500.2 | Wheat | cytosol, extracellular | 25.47 | 28.67 |
| TraesCS6D01G021700.1 | Wheat | peroxisome | 24.84 | 27.4 |
| TraesCS4D01G010000.1 | Wheat | cytosol | 24.22 | 27.27 |
| TraesCS4D01G009700.1 | Wheat | cytosol | 25.47 | 27.15 |
| TraesCS4D01G008700.1 | Wheat | cytosol | 24.84 | 27.03 |
| TraesCS4D01G009800.1 | Wheat | cytosol | 22.98 | 27.01 |
| PGSC0003DMT400094075 | Potato | nucleus | 31.06 | 24.63 |
| TraesCS6D01G067900.1 | Wheat | extracellular | 25.47 | 23.84 |
| VIT_11s0016g03170.t01 | Wine grape | cytosol | 27.95 | 21.03 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G123300.1 | EnsemblPlantsGene:TraesCS1D01G123300 | Gene3D:1.20.120.160 | GO:GO:0000160 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:HPT_dom_sf | InterPro:IPR008207 | InterPro:IPR036641 | InterPro:Sig_transdc_His_kin_Hpt_dom |
| PANTHER:PTHR28242 | PANTHER:PTHR28242:SF11 | PFAM:PF01627 | PFscan:PS50894 | SUPFAM:SSF47226 | TIGR:cd00088 |
| MapMan:11.4.2.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:124902799..124904716
Molecular Weight (calculated)
18288.5 Da
IEP (calculated)
5.071
GRAVY (calculated)
-0.496
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSNLRRQI TFMKKSFFDQ GYLDEQFNQL EELQDESSPN FVEEVVALFL KDSPRLLSNI EQTIGKYPQD FYRLDSLVHQ LKGSGSSIGA VRMKNECSVF
101: KAHCNDRNLE GVSMVVHQMP QVTAEDEEGA CHSEAEAGVI FSVTAASRAS RACRELKEVR R
101: KAHCNDRNLE GVSMVVHQMP QVTAEDEEGA CHSEAEAGVI FSVTAASRAS RACRELKEVR R
001: MQRQVALIKQ SLFDQGYLDE QFMELEELQD DANPNFVEEV SALYFKDSAR LINNIDQALE RGSFDFNRLD SYMHQFKGSS TSIGASKVKA ECTTFREYCR
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK
Arabidopsis Description
AHP4AHP4 [Source:UniProtKB/TrEMBL;Acc:A0A178V965]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.