Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82406 | Canola | cytosol | 98.5 | 98.5 |
| CDY30166 | Canola | cytosol | 91.73 | 91.73 |
| CDY56195 | Canola | cytosol, nucleus, plastid | 81.95 | 87.9 |
| Bra001629.1-P | Field mustard | cytosol | 83.46 | 81.62 |
| AT3G16360.2 | Thale cress | nucleus | 88.72 | 81.38 |
| KRH47212 | Soybean | cytosol, nucleus, plastid | 73.68 | 68.53 |
| KRH23400 | Soybean | nucleus | 71.43 | 63.33 |
| KRH09934 | Soybean | nucleus | 70.68 | 62.67 |
| VIT_09s0002g03520.t01 | Wine grape | nucleus | 70.68 | 62.67 |
| KRH44276 | Soybean | nucleus | 75.19 | 61.35 |
| Os01t0743800-00 | Rice | cytosol, nucleus, plastid | 64.66 | 56.95 |
| GSMUA_Achr11P... | Banana | nucleus | 64.66 | 56.58 |
| GSMUA_Achr10P... | Banana | nucleus | 63.16 | 55.63 |
| TraesCS1A01G341600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 62.41 | 54.61 |
| TraesCS1B01G354300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 62.41 | 54.61 |
| TraesCS1D01G343900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 62.41 | 54.61 |
| HORVU3Hr1G070880.7 | Barley | cytosol | 60.15 | 52.63 |
| TraesCS3D01G275300.1 | Wheat | cytosol | 59.4 | 52.32 |
| TraesCS3B01G309100.1 | Wheat | cytosol | 59.4 | 52.32 |
| EES19834 | Sorghum | cytosol, nucleus, plastid | 58.65 | 50.65 |
| GSMUA_Achr9P16250_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.64 | 50.34 |
| Os05t0186100-01 | Rice | nucleus | 57.14 | 50.33 |
| TraesCS1B01G141500.1 | Wheat | nucleus | 56.39 | 49.67 |
| OQU77568 | Sorghum | nucleus | 54.14 | 47.68 |
| Zm00001d043505_P001 | Maize | cytosol | 63.16 | 47.19 |
| Zm00001d037694_P001 | Maize | cytosol | 60.15 | 44.94 |
| OQU87518 | Sorghum | cytosol | 59.4 | 42.02 |
| HORVU1Hr1G027980.32 | Barley | mitochondrion | 56.39 | 41.67 |
| Zm00001d010791_P001 | Maize | mitochondrion | 53.38 | 41.52 |
| TraesCS1A01G122300.1 | Wheat | nucleus | 48.12 | 39.75 |
| TraesCS1D01G123300.1 | Wheat | nucleus | 48.12 | 39.75 |
| TraesCS3A01G275400.2 | Wheat | extracellular, mitochondrion | 53.38 | 39.23 |
| CDX85268 | Canola | cytosol | 45.86 | 39.1 |
| CDX86370 | Canola | cytosol | 45.86 | 39.1 |
| CDY19992 | Canola | cytosol | 45.11 | 38.46 |
| CDY00096 | Canola | cytosol | 45.11 | 38.46 |
| CDX74472 | Canola | cytosol | 44.36 | 38.06 |
| CDY37282 | Canola | cytosol, nucleus, plastid | 43.61 | 37.66 |
| CDY37867 | Canola | cytosol | 43.61 | 37.42 |
| CDY19286 | Canola | cytosol | 42.86 | 37.01 |
| CDX89890 | Canola | cytosol | 45.86 | 35.88 |
| CDY54309 | Canola | cytosol | 37.59 | 32.47 |
| HORVU1Hr1G075830.31 | Barley | cytosol, mitochondrion, plastid | 51.88 | 31.94 |
| CDY57687 | Canola | cytosol | 36.84 | 31.82 |
| PGSC0003DMT400094075 | Potato | nucleus | 44.36 | 29.06 |
| CDY71948 | Canola | cytosol | 3.76 | 17.24 |
Protein Annotations
| EnsemblPlants:CDX75878 | EnsemblPlantsGene:GSBRNA2T00123864001 | Gene3D:1.20.120.160 | GO:A0A078CLC8 | GO:GO:0000160 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:HPT_dom_sf | InterPro:IPR008207 | InterPro:IPR036641 |
| InterPro:Sig_transdc_His_kin_Hpt_dom | ncoils:Coil | PANTHER:PTHR28242 | PANTHER:PTHR28242:SF4 | PFAM:PF01627 | PFscan:PS50894 |
| ProteinID:CDX75878 | ProteinID:CDX75878.1 | SUPFAM:SSF47226 | UniParc:UPI0004EEE41C | MapMan:11.4.2.2 | : |
Description
BnaC03g39610D
Coordinates
chrLK031805:+:1482686..1484143
Molecular Weight (calculated)
15509.3 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.652
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRQVALIKQ SLFDQGYLDE QFVELEELQD DANPNFVEEV ATLYFKDSAR LISNIEQALE RGSFDFNRLD NYMHQFKGSS TSIGASKVKT ECTMFREYCR
101: VGNAEGCLRT FKQLKKEHAT LRKKLEQYFQ ASK
101: VGNAEGCLRT FKQLKKEHAT LRKKLEQYFQ ASK
001: MQRQVALIKQ SLFDQGYLDE QFMELEELQD DANPNFVEEV SALYFKDSAR LINNIDQALE RGSFDFNRLD SYMHQFKGSS TSIGASKVKA ECTTFREYCR
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK
Arabidopsis Description
AHP4AHP4 [Source:UniProtKB/TrEMBL;Acc:A0A178V965]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.