CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74472	Canola	cytosol	98.06	98.06
CDY71948	Canola	cytosol	15.48	82.76
CDX85268	Canola	cytosol	82.58	82.05
CDX86370	Canola	cytosol	82.58	82.05
CDY00096	Canola	cytosol	78.71	78.21
CDY19992	Canola	cytosol	78.71	78.21
Bra028236.1-P	Field mustard	cytosol	88.39	76.97
AT5G39340.2	Thale cress	extracellular, plasma membrane	92.9	70.59
CDX89890	Canola	cytosol	74.19	67.65
VIT_07s0104g00880.t01	Wine grape	cytosol, nucleus, plastid	63.87	65.56
PGSC0003DMT400051833	Potato	cytosol	59.35	60.53
Solyc06g084410.2.1	Tomato	cytosol	43.87	56.67
KRG95451	Soybean	cytosol	47.1	55.73
KRH31957	Soybean	cytosol	53.55	54.61
KRH67127	Soybean	cytosol	30.97	54.55
KRH71497	Soybean	cytosol, mitochondrion, nucleus	52.9	53.95
GSMUA_Achr11P...	Banana	cytosol	52.26	53.64
CDY19286	Canola	cytosol	51.61	51.95
CDY37282	Canola	cytosol, nucleus, plastid	51.61	51.95
GSMUA_Achr7P14570_001	Banana	cytosol	45.16	46.05
GSMUA_Achr7P14620_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.52	45.39
CDY56195	Canola	cytosol, nucleus, plastid	36.13	45.16
GSMUA_AchrUn_...	Banana	cytosol	43.87	44.74
CDY30166	Canola	cytosol	38.06	44.36
CDX82406	Canola	cytosol	37.42	43.61
CDX75878	Canola	cytosol	37.42	43.61
CDY57687	Canola	cytosol	40.65	40.91
CDY54309	Canola	cytosol	40.65	40.91

Protein Annotations

Gene3D:1.20.120.160	MapMan:11.4.2.2	GO:A0A078HJ27	UniProt:A0A078HJ27	EnsemblPlants:CDY37867	ProteinID:CDY37867
ProteinID:CDY37867.1	ncoils:Coil	GO:GO:0000160	GO:GO:0003674	GO:GO:0004871	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00064829001	InterPro:HPT_dom_sf	InterPro:IPR008207	InterPro:IPR036641	PFAM:PF01627	PFscan:PS50894
PANTHER:PTHR28242	PANTHER:PTHR28242:SF13	SUPFAM:SSF47226	InterPro:Sig_transdc_His_kin_Hpt_dom	UniParc:UPI0004EF0C73	:

Description

BnaC04g31390DBnaC04g31390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJ27]

Coordinates

chrLK032410:-:59213..60680

Molecular Weight (calculated)

17398.7 Da

IEP (calculated)

4.649

GRAVY (calculated)

-0.185

Length

155 amino acids

Sequence
(BLAST)

001: MDTLVAQLQR QFRDYTISLY HQGFLDDQFT ELKKLQDECS PDFVAEVVSL FFEDCEKLIG NMARALDQTG NVDFSLVGSS VHQLKGSSSS VGAKRVKGLC
101: VTFKECCDSQ SFEGCVRCLQ QVDIEYKSLK AKLQDLFNLE QQIVQAGGRI PQVDI

Best Arabidopsis Sequence Match ( AT5G39340.4 )
(BLAST)

001: MICKNLFIGI AISNKLYIFF FSLLLPSRRV ERAMDTLIAQ LQRRFCDFTI SLYHQGFLDD QFTELKKLQD ECSPDFVAEV VTLFFEDCEK LISNMARALD
101: QTGNVDFKLV GSSVHQLKGS SSSVGAKRVK GLCVTLKECC DSQNYEGCVR CLQQVDIEYK TLKAKLQDLF NLEQQIVQAG GRIPQVDI

Arabidopsis Description

AHP3histidine-containing phosphotransmitter 3 [Source:TAIR;Acc:AT5G39340]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.