Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025394.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX86370 | Canola | cytosol | 100.0 | 100.0 |
| AT3G29350.1 | Thale cress | cytosol | 90.38 | 90.38 |
| CDY00096 | Canola | cytosol | 88.46 | 88.46 |
| CDY19992 | Canola | cytosol | 88.46 | 88.46 |
| CDY37867 | Canola | cytosol | 82.05 | 82.58 |
| CDX74472 | Canola | cytosol | 81.41 | 81.94 |
| CDY71948 | Canola | cytosol | 13.46 | 72.41 |
| CDX89890 | Canola | cytosol | 68.59 | 62.94 |
| VIT_07s0104g00880.t01 | Wine grape | cytosol, nucleus, plastid | 60.26 | 62.25 |
| PGSC0003DMT400051833 | Potato | cytosol | 55.13 | 56.58 |
| KRG95451 | Soybean | cytosol | 45.51 | 54.2 |
| Solyc06g084410.2.1 | Tomato | cytosol | 41.67 | 54.17 |
| KRH31957 | Soybean | cytosol | 52.56 | 53.95 |
| KRH71497 | Soybean | cytosol, mitochondrion, nucleus | 51.92 | 53.29 |
| GSMUA_Achr11P... | Banana | cytosol | 50.64 | 52.32 |
| KRH67127 | Soybean | cytosol | 28.85 | 51.14 |
| CDY56195 | Canola | cytosol, nucleus, plastid | 37.82 | 47.58 |
| CDY37282 | Canola | cytosol, nucleus, plastid | 46.79 | 47.4 |
| CDY19286 | Canola | cytosol | 46.79 | 47.4 |
| CDX75878 | Canola | cytosol | 39.1 | 45.86 |
| CDY30166 | Canola | cytosol | 39.1 | 45.86 |
| CDX82406 | Canola | cytosol | 39.1 | 45.86 |
| GSMUA_Achr7P14570_001 | Banana | cytosol | 43.59 | 44.74 |
| GSMUA_AchrUn_... | Banana | cytosol | 41.03 | 42.11 |
| GSMUA_Achr7P14620_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 41.03 | 42.11 |
| CDY57687 | Canola | cytosol | 38.46 | 38.96 |
| CDY54309 | Canola | cytosol | 38.46 | 38.96 |
Protein Annotations
| EnsemblPlants:CDX85268 | EnsemblPlantsGene:GSBRNA2T00142912001 | Gene3D:1.20.120.160 | GO:A0A078DAU5 | GO:GO:0000160 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:HPT_dom_sf | InterPro:IPR008207 | InterPro:IPR036641 |
| InterPro:Sig_transdc_His_kin_Hpt_dom | PANTHER:PTHR28242 | PANTHER:PTHR28242:SF13 | PFAM:PF01627 | PFscan:PS50894 | ProteinID:CDX85268 |
| ProteinID:CDX85268.1 | SUPFAM:SSF47226 | UniParc:UPI000253FA7B | MapMan:11.4.2.2 | : | : |
Description
BnaC07g25790D
Coordinates
chrLK031841:-:656441..657892
Molecular Weight (calculated)
17464.9 Da
IEP (calculated)
4.599
GRAVY (calculated)
-0.208
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MDALVAQLQM QYRNYTVSLY QQGFLDDQFT ELKKLQDDAS PDFVAEVLSL FFEDCVKLIG NMARALDQTG TVDFSQVGAS VHQLKGSSSS VGAKRVKGLC
101: VTFKEYCEAN NYEGCVRCLQ QVDIEYKALQ TKLQDMFNLE KQIIQAGGKV PQVDIN
101: VTFKEYCEAN NYEGCVRCLQ QVDIEYKALQ TKLQDMFNLE KQIIQAGGKV PQVDIN
001: MDALIAQLQR QFRDYTISLY QQGFLDDQFT ELKKLQDDGS PDFVSEVLSL FFEDCVKLIS NMARALDTTG TVDFSQVGAS VHQLKGSSSS VGAKRVKTLC
101: VSFKECCEAK NYEGCVRCLQ QVDIEYKALK TKLQDMFNLE KQIIQAGGIV PQVDIN
101: VSFKECCEAK NYEGCVRCLQ QVDIEYKALK TKLQDMFNLE KQIIQAGGIV PQVDIN
Arabidopsis Description
AHP2AHP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VEN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.