Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g082790.2.1 | Tomato | nucleus | 89.46 | 88.92 |
| AT3G22880.1 | Thale cress | nucleus | 91.27 | 88.08 |
| CDY34225 | Canola | mitochondrion | 99.1 | 87.27 |
| VIT_05s0020g04170.t01 | Wine grape | nucleus | 91.27 | 87.07 |
| KRH35438 | Soybean | nucleus | 89.46 | 86.09 |
| PGSC0003DMT400077570 | Potato | nucleus | 86.14 | 83.87 |
| CDX92963 | Canola | nucleus | 20.48 | 80.95 |
| OQU78622 | Sorghum | nucleus | 81.93 | 80.95 |
| Os11t0146800-01 | Rice | nucleus | 81.93 | 79.07 |
| OQU84696 | Sorghum | nucleus | 81.93 | 79.07 |
| HORVU5Hr1G040730.2 | Barley | nucleus | 82.23 | 78.9 |
| TraesCS5D01G141200.1 | Wheat | nucleus | 81.33 | 78.49 |
| TraesCS5A01G133000.1 | Wheat | nucleus | 81.63 | 78.32 |
| Os12t0143800-01 | Rice | mitochondrion | 81.02 | 78.2 |
| TraesCS5B01G131900.1 | Wheat | nucleus | 80.72 | 77.91 |
| GSMUA_Achr8P26880_001 | Banana | nucleus | 85.24 | 73.32 |
| Zm00001d044629_P001 | Maize | nucleus | 82.83 | 72.56 |
| KRG91377 | Soybean | cytosol | 31.33 | 71.72 |
| Zm00001d050876_P001 | Maize | cytosol | 17.77 | 71.08 |
| Zm00001d035787_P001 | Maize | cytosol | 29.82 | 60.0 |
| Zm00001d016055_P001 | Maize | plastid | 45.78 | 55.27 |
| CDX92430 | Canola | cytosol | 45.48 | 47.34 |
| CDX88837 | Canola | cytosol | 46.08 | 47.22 |
| CDX70947 | Canola | cytosol | 46.08 | 47.22 |
| CDY16571 | Canola | cytosol | 45.18 | 47.02 |
| CDY68195 | Canola | cytosol, nucleus, plastid | 26.2 | 28.62 |
| CDY18933 | Canola | plastid | 28.01 | 26.8 |
| CDX74725 | Canola | nucleus | 28.61 | 23.51 |
| CDX88622 | Canola | cytosol, mitochondrion, nucleus, plastid | 15.36 | 16.67 |
| CDY53383 | Canola | cytosol | 22.29 | 16.12 |
| CDX77188 | Canola | cytosol | 21.99 | 15.9 |
| CDY11869 | Canola | cytosol | 10.84 | 15.65 |
Protein Annotations
| Gene3D:1.10.150.20 | MapMan:13.3.6.4.1 | Gene3D:3.40.50.300 | GO:A0A078I6U2 | UniProt:A0A078I6U2 | EnsemblPlants:CDY46610 |
| ProteinID:CDY46610 | ProteinID:CDY46610.1 | InterPro:DMC1_rcmbase | InterPro:DNA_recomb/repair_Rad51_C | InterPro:DNA_recomb/repair_RecA-like | InterPro:DNA_repair_Rad51/TF_NusA_a-hlx |
| GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0007049 | GO:GO:0007131 |
| GO:GO:0008094 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00085887001 | InterPro:IPR020587 | InterPro:IPR020588 | InterPro:P-loop_NTPase | PFAM:PF08423 | PIRSF:PIRSF005856 |
| PFscan:PS50162 | PFscan:PS50163 | PANTHER:PTHR22942 | PANTHER:PTHR22942:SF30 | InterPro:Rad51_DMC1_RadA | InterPro:RecA_ATP-bd |
| InterPro:RecA_monomer-monomer_interface | SUPFAM:SSF47794 | SUPFAM:SSF52540 | TIGRFAMs:TIGR02238 | UniParc:UPI0004EF2316 | : |
Description
BnaCnng14320DBnaCnng14320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6U2]
Coordinates
chrLK032678:-:179252..182056
Molecular Weight (calculated)
36195.8 Da
IEP (calculated)
5.944
GRAVY (calculated)
-0.118
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSALKSEEA SMQLVEREEI DEEDDLFEAI DKLIAQGINA GDVKKLQDAG IHTCNGLMMH TKKNLTGIKG LSEAKVDKIC EAAEKIVNFG YMTGSDALLK
101: RKSVVRITTG SQALDDLLGG GIETAAITEA FGEFRSGKTQ LAHTLCVTTQ LPTSMKGGNG KVAYIDTEGT FRPDRIVQIA ERFGMDPGAV LDNIIYARAY
201: TYEHQHNLLL GLAAKMSEEP FKILIVDSII ALFRVDFTGR GELADRQQKL AQMLSRIIKI AEEFNVAVYM TNQVISDPGG GMFISDPKKP AGGHVLAHAV
301: TIRLSFRKGK GEQRVCKVFD APNLPEGEAI SF
101: RKSVVRITTG SQALDDLLGG GIETAAITEA FGEFRSGKTQ LAHTLCVTTQ LPTSMKGGNG KVAYIDTEGT FRPDRIVQIA ERFGMDPGAV LDNIIYARAY
201: TYEHQHNLLL GLAAKMSEEP FKILIVDSII ALFRVDFTGR GELADRQQKL AQMLSRIIKI AEEFNVAVYM TNQVISDPGG GMFISDPKKP AGGHVLAHAV
301: TIRLSFRKGK GEQRVCKVFD APNLPEGEAI SF
001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF
Arabidopsis Description
DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.