CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006820.1-P	Field mustard	mitochondrion	86.93	80.36
CDY11869	Canola	cytosol	49.67	66.09
AT5G57450.2	Thale cress	nucleus	60.46	60.86
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	43.79	44.67
PGSC0003DMT400052651	Potato	nucleus	40.52	43.21
KRH01614	Soybean	nucleus	40.52	43.06
Solyc07g055170.1.1	Tomato	cytosol	39.22	42.11
GSMUA_Achr9P13630_001	Banana	cytosol	37.58	40.78
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	32.03	34.51
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	32.03	34.51
Os02t0562100-00	Rice	plastid	32.03	33.79
Zm00001d016839_P001	Maize	plastid	31.37	32.99
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	31.37	31.48
OQU85146	Sorghum	plastid	31.7	30.5
HORVU6Hr1G046290.5	Barley	plastid	32.68	26.45
CDX92963	Canola	nucleus	7.19	26.19
CDX88837	Canola	cytosol	21.9	20.68
CDX70947	Canola	cytosol	21.9	20.68
CDY68195	Canola	cytosol, nucleus, plastid	20.26	20.39
CDY16571	Canola	cytosol	21.24	20.38
CDX92430	Canola	cytosol	21.24	20.38
CDY18933	Canola	plastid	20.59	18.16
CDX74725	Canola	nucleus	20.59	15.59
CDY46610	Canola	nucleus	16.67	15.36
CDY34225	Canola	mitochondrion	16.67	13.53
CDY53383	Canola	cytosol	20.26	13.51
CDX77188	Canola	cytosol	19.93	13.29

Protein Annotations

MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	GO:A0A078DI64	EnsemblPlants:CDX88622	ProteinID:CDX88622	ProteinID:CDX88622.1
InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00148659001
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF24
InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI0004EE40E3	SEG:seg	:

Description

BnaA03g10270D

Coordinates

chrLK031856:-:218587..220183

Molecular Weight (calculated)

33921.2 Da

IEP (calculated)

7.856

GRAVY (calculated)

-0.259

Length

306 amino acids

Sequence
(BLAST)

001: MKPRSLLSQS PTTSLKLTTG CETLDACLHG GFPCDSLTEI VAESGCGKTQ LCLQLSLCAQ LPISNGGLDG SALYLHSEFP FPFRRLHQLS RSFHLSNPSI
101: YADHNDNPCD HVFIQNVHNI GLKQLANKFG LAVVITNQVT DFVESSDGLS GLRIGNLRCL YSSGRRVVPA LGLAWANCVN SRVFISRSDD SICQERREDD
201: ERSGSSYVSR RARRRFDIVF SPYLPASSCE FVITGEGICG RDAEKMDSTF LESGMVVREH QIDTRSLDKS KTLRLRLEKS VESSLGHRLN KTVNFGSLSY
301: HTYANF

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.